Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq108 114 9e-21 seq87 100 2e-16 seq31 82.4 5e-11 >seq108 Length=811940 Score = 114 bits (126), Expect = 9e-21 Identities = 170/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 39485 AATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||||||| || ||||| | ||| ||||| | || | ||| ||||||||| |||||| Sbjct 248990 AATCATCGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTA 249049 Query 39544 TAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCT 39601 ||||| | ||| | ||| |||| ||||||||||| || |||| || || | ||| | Sbjct 249050 TAATCAG--AAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTT 249107 Query 39602 GATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG 39661 |||| | || | ||||||||||| |||||| ||| | | | | |||||| | Sbjct 249108 GATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTGTCGG 249167 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | |||||| ||||||||||| | ||| || || || || ||||| Sbjct 249168 AAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249225 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||| ||| ||||| | || |||||||| ||||||||||| | Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 251253 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | |||||| || |||| || || | |||||||| | || Sbjct 251254 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 251313 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| ||| | | | | || |||| | || || Sbjct 251314 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACC 251373 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| ||| ||||||||||| || || ||||| || |||||||||||| Sbjct 251374 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 251421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||| ||| ||||| | || ||||||||| ||||||||||| | Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATC--CG 250567 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| |||| ||||| || ||||||| || | ||| ||||| | | Sbjct 250568 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAG 250627 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | | |||||||| || | | |||| || |||| | | | || || | ||| Sbjct 250628 GAATACCTTCTTTATC-CTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCA 250686 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| ||||| || || | ||| || ||||| || ||||| Sbjct 250687 ACTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCA 39585 ||||||||| ||||||||||| | ||| | || |||| ||||||||||| || || Sbjct 251001 TTCTTTTTGAATATTATAATCAG--AAAGTGTACGACCATCTTCCAATTGTTTTCCAGCA 251058 Query 39586 AAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATC 39645 ||||| || | ||| ||||| | || | |||||||| || ||||| ||||| Sbjct 251059 AAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTAACA 251118 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 | | | || |||| ||| || || |||||||| ||||| || || | ||||| Sbjct 251119 TTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTG 251178 Query 39706 ACGAAGATCTGCAT 39719 || || || ||||| Sbjct 251179 ACAAAAATTTGCAT 251192 >seq87 Length=1479609 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| |||||||| || | ||| ||| |||| || ||||| || || |||||| Sbjct 253100 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 253159 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | ||| |||||||| | |||| |||||||| || ||||| ||| | | Sbjct 253160 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 253219 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 ||| || |||| ||| || || | ||| || ||||||||||| |||||||| || | Sbjct 253220 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 253279 Query 39710 AGATCTGCAT 39719 | |||||||| Sbjct 253280 ATATCTGCAT 253289 >seq31 Length=1439309 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | | || ||||||||| | ||| |||||| || ||||||||||| | Sbjct 961508 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961567 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | |||||| || |||| || || || |||||||| | || Sbjct 961568 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 961627 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || || || || | || ||| ||| |||| ||| || Sbjct 961628 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAACT 961687 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || ||||| || |||| ||||| || || ||||||||| Sbjct 961688 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATG 961735 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/196 (69%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 ||||||||| ||||||||||| | | | |||| ||| || | |||||| || Sbjct 964791 TTCTTTTTGAATATTATAATCTGAGA----GTGTTCTACCATCTTCAAGTTGTTTTCCAG 964846 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 ||||||| ||||| || ||||| | || | || ||||| || || || || | Sbjct 964847 CAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGCCTTTA 964906 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 || ||| |||||||| ||| || || || || || ||||| || |||||||| | Sbjct 964907 CATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGTTAAAGTCT 964966 Query 39704 TTACGAAGATCTGCAT 39719 | || ||||||||||| Sbjct 964967 TAACAAAGATCTGCAT 964982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347352496389320