Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq57 116 4e-21 >seq57 Length=445469 Score = 116 bits (128), Expect = 4e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 159541 TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAG 159600 || ||| | ||||| ||||||||||| ||| |||| || |||||| | ||| | Sbjct 156758 TCTTGTTTAATGATAACATATCCATCAACAAATGGAGTGTTTGAAGAGACTATCGCCGAT 156699 Query 159601 ATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAAT 159660 || |||| || ||||| | ||||||||| || ||| | ||||| || || | ||| Sbjct 156698 ATTTGTACTATGATTCATAAAGCTGGTGGTCAAGTGTATTTAGATGGAGCTAACATGAAT 156639 Query 159661 GCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTA 159720 || || || || || ||| |||| |||||| ||||| | ||||| ||||| Sbjct 156638 GCTCAAGTTGGATTATGTCGTCCAGGTGATTATGGTAGCGATGTTTCACATCTTAACTTG 156579 Query 159721 CATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || || ||||| ||||| || || || |||||||| ||||| | || |||||||| || Sbjct 156578 CACAAAACATTTTGTATACCTCACGGCGGTGGAGGACCTGGAATGGGACCTATTGGAGT 156520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628 ||||| | ||| | || || || |||| |||||||| |||||||| ||||| || || Sbjct 157900 GCATATCGTTTAACTCTTCAAACACGAGAACAGCATATTAGAAGAGATAAAGCTACTAGC 157841 Query 158629 AACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCAT 158688 || || || || ||||||||||| ||||| |||||||| | | ||||| | ||||||| Sbjct 157840 AATATTTGTACCGCACAAGCACTACTGGCAAATATGTCAGCAATGTATGCTGTATATCAT 157781 Query 158689 GGTGCAGATGGACTA 158703 || | || ||| || Sbjct 157780 GGACCTGAAGGAATA 157766 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 || || || |||||| | || || || || || ||| | |||| | |||| ||||||||| Sbjct 158565 TATACACCATATCAACCAGAAATTTCACAAGGCAGACTTGAAGGTCTATTGAATTACCAA 158506 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 || | || || | || ||| | ||||| ||||||||||| |||||||||| Sbjct 158505 ACAATGATATGTGATTTAACTGGAATGGAAATAGCGAACGCATCTCTTTTAGATGAAGGT 158446 Query 158083 ACTGCAGCAGCAGAAGC 158099 |||||||||||||| || Sbjct 158445 ACTGCAGCAGCAGAGGC 158429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588021503414400