Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq43 187 3e-42 seq50 172 6e-38 >seq43 Length=2749190 Score = 187 bits (206), Expect = 3e-42 Identities = 228/312 (73%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 47231 TTGAATAGATCCTCCgttttctataattttgtttttta-at--tcatttgaccaaagttt 47287 ||| ||||| || ||| ||||||||| ||||| | || ||||| |||||| | Sbjct 1504427 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATT---CCAAAGATC 1504483 Query 47288 tcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTAC 47347 || ||||||||| | ||| | ||||||||| |||| |||||| ||||| || || || Sbjct 1504484 TCTTTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAAC 1504543 Query 47348 TCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTG 47407 ||| | |||| ||||| || || |||||||||||||||||||||||||| |||||||| Sbjct 1504544 TCTTCTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTG 1504603 Query 47408 AGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTG 47467 |||||||||||||| ||||| | ||||| ||| || |||||| ||||||| ||| Sbjct 1504604 TGCAGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGC 1504663 Query 47468 TATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATC 47527 || | |||||||||| | || | ||||| | ||||||| | ||| Sbjct 1504664 AATTTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAGCATTCCACATATC 1504723 Query 47528 ATATTGAAGAAT 47539 ||||| | ||| Sbjct 1504724 GTATTGTAAAAT 1504735 Score = 163 bits (180), Expect = 3e-35 Identities = 225/312 (72%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| |||| ||||||| || | ||| || | ||||| |||||||||||||||||| Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 ||||| || | | | || |||| |||||| ||||||||||| | ||||| || ||||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || ||||| | |||||| | | |||||| |||| |||| || || | || Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1506635 Query 48450 CTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 | || || |||| ||| | || | || | || |||||||| || ||| || Sbjct 1506636 GTACCTCTTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCTGATTTGCTAAT 1506694 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| | ||| | || |||||||||||||| |||||||| || |||| |||| Sbjct 1506695 GAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAA 1506754 Query 48569 TAGAAAACAACT 48580 || |||||| || Sbjct 1506755 TAAAAAACAGCT 1506766 Score = 125 bits (138), Expect = 8e-24 Identities = 209/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 |||| | | || | | |||||||||||| | || | ||| | || | ||| | |||||| Sbjct 1506814 ATTTTAAAAAATATACCTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGG 1506873 Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682 ||||||||| |||| | |||||||| || ||||| ||||| ||| | | || Sbjct 1506874 AGATGCATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAAT 1506933 Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 ||| ||| ||| | | | || | ||||||||||| || ||||||||||| | Sbjct 1506934 ATCTTCACCATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTAC 1506993 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| || |||||| || | ||| | |||| | ||||| ||||||||||| || || Sbjct 1506994 TTTTCCATGTATTTTTAATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATA 1507053 Query 48803 TGAAAAGTCGTTATCATTAATAATTGATGAATTTA--TTCTTTCCTTATGTTTATATACT 48860 ||| || |||||| ||| |||| ||||||| || ||| | | | ||| |||| | Sbjct 1507054 ACTAAAATCTCTATCATAAATTATTGCAGAATTTAACTTATTTGCATTTTTTTGTATAAT 1507113 Query 48861 A 48861 | Sbjct 1507114 A 1507114 Score = 116 bits (128), Expect = 4e-21 Identities = 115/146 (79%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 ||||| ||||| |||||||||||||||||||||| || | |||| ||||||||||| Sbjct 1507281 CTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATATT 1507340 Query 48978 GCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCTAA 49036 |||||||||||||| | || || ||| || | | |||| ||||| | ||||||| Sbjct 1507341 GCATAATCTGGATGTTTAGTAGT-CATAGTTGCTGCTGTTTCAGCTGCAAGATTATCTAA 1507399 Query 49037 TTCTTTAGTAGTTACACCTGTATATA 49062 ||| |||||||||||||| ||||| Sbjct 1507400 TTCAACAGTAGTTACACCTGAATATA 1507425 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||||||||| |||||||| ||| | ||| | |||| || ||||||| || Sbjct 1504159 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 1504218 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||||| ||||| ||||||||||| | ||| |||||||| | |||||| | Sbjct 1504219 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 1504278 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAA 47199 |||||||||| ||||| ||||||||||||| Sbjct 1504279 TTTGTGGTATTTCCCAAACTGTTTTATAAA 1504308 Score = 100 bits (110), Expect = 3e-16 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||||| |||| ||| ||| | ||| |||| ||| | ||| | | || ||| ||||| Sbjct 1504823 TCCTTTGCTTACTGGACTACCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTC 1504882 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 |||||| ||||| || |||| |||||| | |||||||||||||| || || || || Sbjct 1504883 ACAACTGGCTTCTAAAGCACCATAATACAATGTTTCAAATATTTGAATATTAAGTTTTTG 1504942 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 ||||||| |||||| ||||| |||| |||||| | ||||||| Sbjct 1504943 TGCTTCTTCACTTTCAAATGGATAGCGCATTAAAAGAAATGCATCTGCAAGACCTTGAAT 1505002 Query 47720 ACCAATACC 47728 |||||||| Sbjct 1505003 TCCAATACC 1505011 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 47837 TTTATTAAAATCAAACTTGTTATTTATA------ACAAACCTATTAAGTGCTATAGATGC 47890 ||| | ||||||||| | | ||| ||| |||||| |||||| || || || || Sbjct 1505189 TTTTTGAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGC 1505248 Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 || |||||| ||||| || |||| |||| | | ||| || | | ||| | ||||| ||| Sbjct 1505249 TAAATTACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATT 1505308 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTG 48008 || || ||| || || || | |||||||||||| ||| ||||| || || Sbjct 1505309 ACTACTTTTTATTGTTCCTATATTTTGATGATTTGATTTGCG--ATTACAATGATCTTTA 1505366 Query 48009 TAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 ||||||||| | || ||||| ||||| | ||||| || |||| | |||| Sbjct 1505367 TAAAGCATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 1505419 >seq50 Length=3512070 Score = 172 bits (190), Expect = 6e-38 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||| || |||| ||| || || ||| |||||||||||||||| |||||| || Sbjct 996436 TGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCAT 996495 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCT 19340 || | ||||| || || ||||| | ||| |||||||| |||||||| || ||||| Sbjct 996496 GGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCG 996555 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| || | ||| ||||| || ||||||||| |||||||||||||||||| ||||| Sbjct 996556 TTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGA 996615 Query 19401 AATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 ||||||||||||||| | ||||| ||||||||||| Sbjct 996616 TATAAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 132 bits (146), Expect = 5e-26 Identities = 164/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 18766 TTTTTGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATC 18825 ||||| | |||||||||| |||| |||||| || ||||||| |||||| ||| Sbjct 995796 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 995855 Query 18826 ATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCT 18885 | | ||| ||||| ||||| | || |||||||| ||||||||| | |||||||||||| Sbjct 995856 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 995915 Query 18886 ATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGA 18942 || || || || || ||||| ||| |||| |||| || || | || | Sbjct 995916 ATTTTGACAGCATCCTTAATAATTGATGTGACTC---GTTCAGAAGATGGTTTTTGTACA 995972 Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 | ||||| ||||| |||||||||||||||||||||| ||||| Sbjct 995973 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 125 bits (138), Expect = 8e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||| || | |||||| |||||| | || ||||| || ||||| |||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| |||| ||| || ||| |||||| |||||||||||||| ||||||| Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | | ||| | || ||||| | || | ||||| || | ||||||| || Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||| |||||||||| | || |||| ||||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAATA 996342 Score = 125 bits (138), Expect = 8e-24 Identities = 126/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||||||| | ||| |||||||| |||||||||||||| || || |||||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTatttttattttcttt-aaga 19566 ||| |||||| | |||| |||||||| | |||||||||| | ||||||||| || | Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAATA 996854 Query 19567 ataggttccattttttgaaaaataataatttcttttcaata 19607 || ||||| | || | || || || ||||||| |||| Sbjct 996855 AT-GGTTCTAATTCTGGATTAAATTTACTTTCTTTCAAATA 996894 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 18585 ATATTTTAGT-TGATTGTTATGTTATGG-TTAAAAATCAACATCCAAAGAAAAA--GAAT 18640 |||||||| | | ||| || | |||| |||||| ||| ||| | || |||| | | Sbjct 995522 ATATTTTACTATTATTTTTGTCTTATAAATTAAAATTCAGCATTAACAGTAAAATTGCTT 995581 Query 18641 TCTCTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGA 18700 || ||| || | |||||||||| |||||||||||| | ||| |||||||||||| Sbjct 995582 TCAATTC--TATCTTGCATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGA 995639 Query 18701 AATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTT 18751 | || || || || ||||| || ||| |||||| |||||||| ||||||| Sbjct 995640 AGTTTGTCTTACCTTCTAAAGAAATATGTTCCATGAAATCAAACGGATTTT 995690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562080413505600