Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq50 107 2e-18 >seq50 Length=3512070 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 ||||| || || |||||||||| ||| ||||||||| || |||| |||||| || || Sbjct 996439 ATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 996498 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 | ||||||||||| ||||| | || || | || ||| || || | | ||| | | Sbjct 996499 AACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 996558 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | | || ||||| || || |||||| ||||||||| || || | |||| ||| Sbjct 996559 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 996618 Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCA 37655 ||||||| ||||| | ||| || ||||||||| Sbjct 996619 AAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 104 bits (114), Expect = 3e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 ||||| ||||||||||| || |||| |||||| |||| | |||| || || || | || Sbjct 995823 CTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTATCATTTCA 995882 Query 37068 ACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTA 37127 || || | ||||||| | |||| || ||| ||| | |||||||| |||| || ||| Sbjct 995883 ACAGGTAATGCATCTGTCAAAAATTCTTGTTCAATTTTGACAGCATCCTTAA-TA-ATTG 995940 Query 37128 ACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTTAAACAATAAACATGCAAAA 37184 | | ||| ||||| | || | || || | | ||| |||| ||||||||||||| Sbjct 995941 A-TGTGACTCGTTCAGAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGCAAAA 995999 Query 37185 TCACAATGTAAACC 37198 ||||||||||| || Sbjct 996000 TCACAATGTAATCC 996013 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 36807 TATTATTTTTCCTTCATTTTTTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTATT 36865 |||||||||| | || |||||| || ||| |||| ||||| || |||| | | Sbjct 995531 TATTATTTTTGTCTTATAAATTAAAATTCAGCAT-TAACAGTAAAATTGCTTTCAATTCT 995589 Query 36866 ACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTT 36925 | | ||| |||||| ||||||||||||||| ||| | |||| || || |||||||| Sbjct 995590 ATCTTGCATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTT 995649 Query 36926 TCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||||| || |||| |||||| |||||||| ||||| Sbjct 995650 ACCTTCTAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| |||||||| || | |||||| ||| || | ||||||||| | |||||| | Sbjct 996119 AACCT-CATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCT 996177 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 |||| | ||| || || || || ||| ||| ||||||||||||||| ||||| |||| Sbjct 996178 TTTTTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAA 996237 Query 37315 ATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAAT 37374 | || || | |||| | ||||| | ||| | || ||||| ||| | ||||| Sbjct 996238 AAGCAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAAT 996297 Query 37375 CTGCCTTTAATTTAACACAT-TCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 || ||| | ||||||| ||| | ||||||| || || || | |||| Sbjct 996298 GAGCTTTTTTTGCAACACATGGCAAAT-TTTCAATAGCGTTAAATAAGAAGT 996348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592286888001600