Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2544 136 3e-27 seq108 127 2e-24 seq87 98.7 8e-16 seq31 93.3 3e-14 >seq2544 Length=277 Score = 136 bits (150), Expect = 3e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || || |||||||||||||||||||| || ||| | || Sbjct 273 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGG 214 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||||||||| ||||| ||||||| ||||||||||| |||| || ||| Sbjct 213 CCATCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCC 154 Query 48669 TTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 || || ||| ||| ||||| ||| | | | || || || || || || | || Sbjct 153 TTATCTTGAAT-TTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGT 95 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||||||| || | |||||||||||| || ||||| Sbjct 94 AATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 56 >seq108 Length=811940 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || |||||||| || ||||||||||||||| |||||||||| | || | Sbjct 251206 CGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCA 251265 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || ||||| ||||| |||| || || ||||| | |||| || |||||| Sbjct 251266 TCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTG 251325 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||| || ||||||| | | | ||||| ||||| ||||||| || || Sbjct 251326 TCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACCTCCAGAGTTATT 251385 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| ||||| ||||| |||||||| Sbjct 251386 GTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 251420 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || |||||||| || |||||||||||||| ||||| || || | ||| | Sbjct 250522 CGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCA 250581 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| ||| ||||| ||||| |||| || ||||||||| | |||| || || || Sbjct 250582 TCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTA 250641 Query 48672 TCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 || || | ||| || || ||| | | || || || || || || || | ||||| Sbjct 250642 TC-CTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAACTTCTAAAGTAAT 250700 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || | ||| || || ||||| ||||| Sbjct 250701 AGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| |||||||| || | || | || ||||| || || || ||||| Sbjct 249035 TCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAG 249094 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || ||||| ||| ||| ||||||| Sbjct 249095 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 249154 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | ||||| ||||| ||||| | ||| || ||| Sbjct 249155 TCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACA 249214 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 249215 AAAATTTGCAT 249225 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| || ||| | || | || ||||| || || || ||||| Sbjct 250774 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAG 250833 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||| || | |||| || || ||||| |||||| ||||||| Sbjct 250834 ATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTTACATTT 250893 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | ||||| || |||||||| | |||||| || Sbjct 250894 TCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGACG 250953 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 250954 AAAATTTGCAT 250964 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || || |||||||||||||| |||||||| || | ||| Sbjct 250975 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTACGA 251034 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || || ||||| |||| || ||||||||| | |||| || || Sbjct 251035 CCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCT 251094 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| ||| | | | ||||| || || || || | ||| Sbjct 251095 TTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTA 251154 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||||| |||||||| ||||| Sbjct 251155 ATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCAT 251192 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || || |||||||||||||||||||| || ||| | ||| Sbjct 249464 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGA 249523 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| ||||| ||||| ||||||| |||||| || | |||| || || Sbjct 249524 CCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCT 249583 Query 48669 TTGTCGCTAATCTTTTGTTTTACA 48692 ||||| ||| ||| ||||||| Sbjct 249584 TTGTCTTGAATTTTTGCTTTTACA 249607 >seq87 Length=1479609 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||||||||| || || |||| | | || | || || || ||||| || ||||| | Sbjct 253100 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 253159 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || || || ||||| | || | || || || || ||| || ||| ||| Sbjct 253160 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 253219 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| || || || || | || || ||||| |||||||||||||| |||| Sbjct 253220 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 253279 Query 48757 AAATCTGCATCGTG 48770 | |||||||||||| Sbjct 253280 ATATCTGCATCGTG 253293 >seq31 Length=1439309 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| || || ||| | | || || | || || || ||||| Sbjct 964792 TCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAA 964851 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | |||| ||||| || || |||||| |||||| Sbjct 964852 ATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGCCTTTACATTC 964911 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| || || || || | || || |||||||| || ||||| || ||| Sbjct 964912 TCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGTTAAAGTCTTAACA 964971 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 964972 AAGATCTGCAT 964982 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| |||||||| || || ||||| |||||||| ||||| || || ||| | || Sbjct 961522 CAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGTTCTTCCATC 961581 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | || || || ||||| |||| ||| || ||||| | |||| || || || || Sbjct 961582 TTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATC 961641 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| |||||| | | | ||||| || || || || | || || || Sbjct 961642 TTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAACTTCAAGAGTGATGGT 961701 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||||| |||||||||||||| Sbjct 961702 TTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 961734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380918843584920