Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq31 122 7e-23 seq108 114 1e-20 >seq31 Length=1439309 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || ||||| ||||||||| ||| ||| ||||| Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || || | || || ||||| ||| | || |||||| Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCAGATCA 964202 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| || |||||| | |||||| | |||| | | |||||||| Sbjct 964201 ACAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 964142 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||||||||| || ||| | || || ||| | |||||||| || Sbjct 964141 CATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGGAAT 964091 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || |||||||| || ||| ||| ||||| Sbjct 961734 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 961675 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 961674 GATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 961615 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | |||||||| || |||||| | |||||| | ||| | | |||||||| Sbjct 961614 CAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTATAAT 961555 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||||| || ||||||| ||| | |||||||| || Sbjct 961554 ATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGAAT 961505 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 |||||||||| || ||||| || || ||||| || ||||| || ||| ||| ||| Sbjct 964987 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAG 964928 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 ||||||| || | | || | ||| || || || ||||||||| | || || Sbjct 964927 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAGGGAATTCCACCAG 964868 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| | | || ||||| || |||||| | |||||| || ||| | | |||| Sbjct 964867 ATCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATT 964808 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCA 28756 |||| |||||||||||||||||||| || Sbjct 964807 ATAATATTCAAAAAGAATCTACTCTTCA 964780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || || || ||||| || ||| |||| Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | ||| || || |||||||| ||| | ||| || || Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 961388 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| || |||||| | |||||| | ||| | | |||||||| Sbjct 961387 ACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAA 961328 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||||| || ||||||| ||| | |||||||| || Sbjct 961327 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGAAT 961277 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || ||||| ||| | || ||||| ||| || | || ||||| || |||||| | ||| Sbjct 961120 GATAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATTTTTGCTGGAAAACAACTTGAA 961061 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | | |||||||| ||||| |||||||||||||| || ||||||| Sbjct 961060 GATGGAAGAACACTCTCAGATTATAATATTCAGAAAGAATCTACTCTTCATTTGGTATTG 961001 Query 28767 AGATTACGAGGAGGGAT 28783 ||| | |||||||| || Sbjct 961000 AGACTTCGAGGAGGAAT 960984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || || || ||||| ||| ||| |||| Sbjct 960986 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960927 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | ||| || || || ||||| ||| | || ||||| Sbjct 960926 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960867 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| |||||||| | |||||| | ||| | | |||||||| Sbjct 960866 ACAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCTGATTATAA 960807 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||||| || ||||||| || | || ||||| || Sbjct 960806 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGCGACTTCGCGGAGGAAT 960756 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || || || ||||| ||| ||| |||| Sbjct 960758 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960699 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | | || || || | || || ||||| ||| | || |||| Sbjct 960698 GGATACAATAGAGAACGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCTGATC 960640 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | || || | || ||||| || |||||| | |||||| | ||| | ||||| | Sbjct 960639 AGCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGATTACA 960580 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || |||||||||||||| |||||| ||||||| ||| | |||||||| Sbjct 960579 ATATCCAAAAAGAATCTACACTGCACTTGGTATTGAGACTTCGAGGAGG 960531 >seq108 Length=811940 Score = 114 bits (126), Expect = 1e-20 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | ||||||||||| ||||| ||| ||| |||| Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || |||||||| || | || ||||| Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCTCCTGATCA 249107 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 ||||||| | |||||||| || ||||||||||||||| | | ||| | | |||||| Sbjct 249106 ACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTT--CTGATTAT 249049 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || |||||||||||||| ||||| ||| | ||| Sbjct 249048 AATATTCAAAAAGAATCGACTCTTCACCTTGTA 249016 Score = 109 bits (120), Expect = 5e-19 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| |||||| | || || ||||| ||||| ||| ||| |||| Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| || | | || | || || |||| || || ||||| || | || |||| Sbjct 251133 AGATACCATTGAAAATGTTAAAGCTAAAATTCAG-GATAAAGAAGGTATTCCTCCCGATC 251075 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTA 28729 |||||||| | || ||||| || ||||||||||||||| || | ||| | | ||||| Sbjct 251074 AACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTT--CTGATTA 251017 Query 28730 TAACATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||||||||||||||| || || Sbjct 251016 TAATATTCAAAAAGAATCTACACTTCA 250990 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | ||||||||||| ||||| ||| ||| ||| Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || | || ||||||| || |||||||| || | || || || Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCGCCTGACCA 249335 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| |||||||| || ||||| ||||||||| | ||| | |||||||||| Sbjct 249334 ACAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAA 249275 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 || |||||||||||||| || || Sbjct 249274 TATCCAAAAAGAATCTACACTTCA 249251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || |||||||| || | || || ||||||||||| |||||||| Sbjct 249602 AAGCAAAAATTCAA-GACAAAGAAGGTATTCCGCCTGACCAACAGAGACTGATCTTTGCT 249544 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || ||||| ||||||||| | ||| | ||||||| || ||||||||||||||||| Sbjct 249543 GGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAAAAGAATCTACA 249484 Query 28752 CTGCA 28756 || || Sbjct 249483 CTTCA 249479 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | ||||| || || ||||| ||| ||| |||| Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || || | || |||||||| || | || || || Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAA-GACAAAGAAGGTATTCCTCCTGACCA 250846 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||| | |||||||| || ||||||||||||||| ||| | ||||||| || Sbjct 250845 ACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAA 250786 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||||| || || || Sbjct 250785 TATTCAAAAAGAATCAACCCTCCA 250762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425383854131160