Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq43 123 1e-23 >seq43 Length=2749190 Score = 123 bits (136), Expect = 1e-23 Identities = 211/304 (69%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||| ||||| |||||||| || ||||||||||||| ||||||||||||||||| ||||| Sbjct 1506464 ATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATATATAGC 1506523 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| || |||||| ||| |||||||| || |||| || || | |||| | || Sbjct 1506524 AAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATAC 1506583 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT----GCTATGAATCTTGGATC 26174 | | | |||||||| || ||| | || | || ||| ||||| | || | | Sbjct 1506584 TCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTAT---TGGTGTA-C 1506639 Query 26175 CTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTG 26234 || | | || |||| || ||| || || || |||||||| |||| ||| || Sbjct 1506640 CTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATGAGTG 1506699 Query 26235 CACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAA 26294 |||| | | ||| || ||||||||| || ||||| | ||||| |||||||| Sbjct 1506700 CACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAATAAAA 1506759 Query 26295 AACA 26298 |||| Sbjct 1506760 AACA 1506763 Score = 118 bits (130), Expect = 5e-22 Identities = 134/177 (76%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTT--ATTGATAAGTTTGAAGTGAATGGTTCAAAACAT 25072 ||| ||||| |||| |||||||||| || |||| || ||| ||||||| | | || Sbjct 1504526 AAACTCTCCTGACAGAACTCTTCTTGTATAGATATTGCTG--GTGTATGGTTCTATAGAT 1504583 Query 25073 TCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAA 25132 |||||||||||||| ||||| | ||| |||||||||||||| ||| ||||| | ||| Sbjct 1504584 TCATTATTTCCTAAAATTTGTGCAGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAA 1504643 Query 25133 TTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC---TAAATTA 25186 ||||| | |||| |||| |||| | || ||| || || |||||| ||||||| Sbjct 1504644 TTTCTAACTCCATGTTTAGCAATTTTTTTTTTCAAAATAGTCCAATCCCATAAATTA 1504700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253027540943000