Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq57 111 2e-19 >seq57 Length=445469 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 139259 TAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTG 139318 || ||| || | ||||||||| | ||||| | | | ||||||||||| || |||||||| Sbjct 157766 TATTCCTTCAGGTCCATGATATACAGCATACATTGCTGACATATTTGCCAGTAGTGCTTG 157825 Query 139319 TGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAG 139378 ||| || || || || || || ||||| ||||||||||||||||| |||| ||||| || Sbjct 157826 TGCGGTACAAATATTGCTAGTAGCTTTATCTCTTCTAATATGCTGTTCTCGTGTTTGAAG 157885 Query 139379 TGCTAATCTGTATGCA 139394 | ||| | |||||| Sbjct 157886 AGTTAAACGATATGCA 157901 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | ||||| |||||||| || || || ||||| ||||| || || Sbjct 156520 ACTCCAATAGGTCCCATTCCAGGTCCTCCACCGCCGTGAGGTATACAAAATGTTTTGTGC 156579 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || ||||| | ||||| |||||| |||| ||| || || || || ||| Sbjct 156580 AAGTTAAGATGTGAAACATCGCTACCATAATCACCTGGACGACATAATCCAACTTGAGCA 156639 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| || ||||||||| | ||||| || |||| || Sbjct 156640 TTCATGTTAGCTCCATCTAAATACACTTGACCACCAGCTTTATGAATCATAGTACAAATA 156699 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | ||| | |||||| || |||| || ||||||||||| ||||| | ||| || Sbjct 156700 TCGGCGATAGTCTCTTCAAACACTCCATTTGTTGATGGATATGTTATCATTAAACAAGA 156758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 ||||||||||||||||| |||||||||| ||||||||||| |||||| | ||| || Sbjct 158429 GCCTCTGCTGCTGCAGTACCTTCATCTAAAAGAGATGCGTTCGCTATTTCCATTCCAGTT 158488 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 | || || | ||||||||||| |||| | |||| | ||| || || || || || Sbjct 158489 AAATCACATATCATTGTTTGGTAATTCAATAGACCTTCAAGTCTGCCTTGTGAAATTTCT 158548 Query 139983 GCTTGATAGGGAGTGTA 139999 | |||||| || || || Sbjct 158549 GGTTGATATGGTGTATA 158565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578969160580800