Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq43 86.0 7e-12 >seq43 Length=2749190 Score = 86.0 bits (94), Expect = 7e-12 Identities = 232/350 (66%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 75872 GATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTAC 75931 ||| | |||| |||||||| | || || || || ||||| |||||||||||||| Sbjct 1505425 GATTTATGGACAGCTATTCTTATTTCTCAAGTTGAAACAGGAACTCCATATATGCTTTAT 1505366 Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 || ||| |||||| || || || | ||| | |||||||| || || ||| Sbjct 1505365 AAAGATCATTGTAATCGCAAATCAAATCATCAAAATATAGGAACAATAAAAAGTAGTAAT 1505306 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 | || || ||| || | |||| | | ||||| ||||| || ||||| || Sbjct 1505305 TTATGTACAGAAGTTGTGCAGTATTCCAGTCCAGATGAAGTTGCTGTCTGTAATTTAGCT 1505246 Query 76052 TCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT 76111 ||||| || || | || ||| ||| | || || ||||||| | |||||||| Sbjct 1505245 TCAATTGCTGTTAATATGTTTGTAAATCCTATTAATCAAACATTTGATTTTCAAAAACTT 1505186 Query 76112 CATGAAA-TCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTA 76170 | ||||| | ||||| |||||||| ||||| || | | || || |||| ||| Sbjct 1505185 C-TGAAAGTAACAAAAATTGTTACTTGTAATCTCGACAAAATTATCGATGTCAATTATTA 1505127 Query 76171 TCCCGTT-GAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGT 76219 |||| || ||| || |||||| ||| | |||| |||||||| ||| Sbjct 1505126 TCCCATTCCAGA-AGCAAAAAAGTCAAATTTTAGACATAGACCTATAGGT 1505078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596539473235200