Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq105 120 9e-22 seq696 104 7e-17 seq50 104 7e-17 seq75 98.7 3e-15 seq4 86.0 2e-11 >seq105 Length=1599832 Score = 120 bits (132), Expect = 9e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| ||||||| ||||| ||||| ||||| || | | ||| |||| || || | Sbjct 1140054 CTTTTTCTACCAACGGCATCGATTTCATCAATAAATAATATACATGGAGCATGTTTCCGT 1140113 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | |||||| | |||| || | |||| |||| |||||| ||||||| | |||| Sbjct 1140114 GCCAATGCAAACATATCTCGAACTCTTGATGGACCAACACCAACGAACATTTCCAAAAAT 1140173 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | ||||| ||| || | |||||||||||| || ||| ||| | || | Sbjct 1140174 TCTGAACCTGATACACTAATAAAAGGTACATTTGCTTCACCAGCTGTAGCCTTAGCTAAT 1140233 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| ||||| ||||||||||| || Sbjct 1140234 AATGTTTTACCAGTTCCAGGTGGACC 1140259 >seq696 Length=143706 Score = 104 bits (114), Expect = 7e-17 Identities = 170/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| ||||| | | | ||| || | || || | |||||| ||||||| | | Sbjct 3213 AAATAAATCTCTCATTCTGCGTGCACCCTGTCCTACTAAAATTTCTTCAAATTCTGGTCC 3154 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | | |||| |||| |||| ||||| || |||||||| || || | | |||||| Sbjct 3153 AGCTGCATGAAAAAATGGTACACCAGCTTCACCAGCTACTGCTCTAGCTAACAATGTCTT 3094 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGA 289265 |||||||| |||||||| |||||| || || || |||| ||||| ||| ||||| Sbjct 3093 TCCTGTTCCTGGTGGTCCTACTAATAATACACCTTTAGGTAGCTTTGCACCAAGTGCAGA 3034 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC-CTCAAGTTCATATTTTGCCT 289324 | |||| || || | ||||||||||| ||||| || || || ||| | ||| || | Sbjct 3033 ---AAATTTTTCTGGATTTTTTAAAAATTCGACAATATCACTTAA-TTCTTGTTTAGCTT 2978 Query 289325 C 289325 | Sbjct 2977 C 2977 >seq50 Length=3512070 Score = 104 bits (114), Expect = 7e-17 Identities = 163/227 (72%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 133416 TATTCAACGCCATTAGCGAATTT-CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAA 133474 |||| ||||| ||| | ||||| || ||| || ||| ||| || | ||||| | || Sbjct 996342 TATTTAACGCTATT-GAAAATTTGCCATGTGTTGCAAAAAAAGCTCATTGGGCGTTAAAT 996284 Query 133475 TGGAT---CCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTA 133531 ||||| ||| || | |||| | |||| || ||| | ||||||||||||| |||| Sbjct 996283 TGGATAAACCATGAAA---GTGCTACTTTTCCTGAACGTGTGGTTGCTTTTGCTGCAGTA 996227 Query 133532 GAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 || || ||||| || |||||| ||| ||| ||||||| ||| | |||||| | ||| | Sbjct 996226 GAAGGTATTTTCTTTAGTGGTAGTTTC-GCTGCTATTTTCTGGTTAAAAAAGAGAGGTCT 996168 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 | | || ||||| ||| || ||||||||||| || || |||| Sbjct 996167 TATGCCAGGACTTACATTTAGCAATGAACTTATTTCTAGAGATGAGG 996121 >seq75 Length=298487 Score = 98.7 bits (108), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| | ||| | ||||||| || ||||||||||| Sbjct 38351 ATTTCTAACTGTTCCATCATAATGCACCATTACAGATTCCATAGCTTTTATTAAACGACG 38292 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| ||||||||| | ||||||||||| ||||| || ||||| |||||||||| Sbjct 38291 TTGAATGTAACCAGTTTCTGCAGTTTTTACAGCAGTATCGATAAGACCTTCACGACCACC 38232 Query 302658 CATAGCATGGAA 302669 ||||||||| || Sbjct 38231 CATAGCATGAAA 38220 >seq4 Length=912327 Score = 86.0 bits (94), Expect = 2e-11 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 380915 TATGGTTTATTAAGGGTGATACATCAA---ACAGAAGGCTAAAGGCACAGAATGTAAAAA 380971 ||||||||||||| || || || || | |||| |||| | | | |||| | | Sbjct 866603 TATGGTTTATTAAAGG--ATCCACAAATGCAAAGAAA-CTAAGCGAAAAAGATGTTCATA 866659 Query 380972 TCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAATAACGAAG 381031 | ||| ||| ||| || |||||||| |||||||| ||||| | || ||| |||| Sbjct 866660 TTTGGGATGCAAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATAGGGAAG 866719 Query 381032 AAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTT 381075 ||| || | ||||||||||| |||||||| |||||||||||| Sbjct 866720 AAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTT 866763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471741415041480