Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq599 102 5e-17 >seq599 Length=422657 Score = 102 bits (112), Expect = 5e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 96160 GCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGCTACT 96219 || || ||||||||||| ||||| ||||| ||| ||||| ||| ||||| | ||||| Sbjct 90835 GCCAAAACTGTAGCTGTAGTTGTACCATCACCTGCTTCTTCATTCGTATTATTTGCTACA 90894 Query 96220 TGTT-TAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCTAGC 96278 | || || | |||| || || | || | |||| ||||| ||| | || | || |||| Sbjct 90895 TCTTGTACTAATTT-TGCTCCAATATTCTGAAATTTATCTTTTAATTCAACTCCTTTAGC 90953 Query 96279 CACACTTACACCATCTTTAGTAATGATTGGATTATACTGGTCTAAACCTAGTATAACATT 96338 || | ||||||||||||||||| ||||| || | | ||| |||||||| Sbjct 90954 AACTGTAACACCATCTTTAGTAATTTTTGGACTACCCCAACTTTGTTCTAAGATAACATT 91013 Query 96339 CTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTACACCT 96393 ||| ||| || | |||||| |||||||| |||||| ||| |||||| Sbjct 91014 ACGTCCTTTTGGACCCATTGTTACTGCAACTGCATCTGCTAAAATATCAACACCT 91068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321196984284760