Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq367 102 1e-16 seq64 87.8 2e-12 >seq4 Length=912327 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 172401 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 172460 ||| | |||||| |||||||||| || || || |||| || ||| || | || |||| Sbjct 866596 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAACTAAGCGAAAAAGATGTT 866655 Query 172461 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 172520 | ||||| ||| ||| |||| ||||| || ||||||| || || ||||| || || Sbjct 866656 CATATTTGGGATGCAAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATAGG 866715 Query 172521 AAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACAT 172565 ||||||| |||||||| || |||||||||||||||||||||||| Sbjct 866716 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 866760 >seq367 Length=149558 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 165953 AAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAA 166012 || ||||| ||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 68375 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 68316 Query 166013 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 68315 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 68257 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || Sbjct 68256 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 68197 Query 166132 ATCAAGATATATTTATACCA 166151 | ||||||||| ||||| Sbjct 68196 TCCTCGATATATTTTTACCA 68177 >seq64 Length=711803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 194236 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGG 194294 ||||| || |||| || ||||||||| ||| | |||| |||||||| |||||||| Sbjct 22266 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGA-CAAAAAGGTACTTGTGG 22208 Query 194295 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 194354 || ||| |||||| |||||||||||| || | |||| | |||||||||||| Sbjct 22207 AATTCAATATAGACAAGAGGATATGCCATTTTCATGTGAAGGTCTTACACCAGATATTAT 22148 Query 194355 TATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 194404 || ||||| || |||||| || | ||||| ||| ||| | |||| Sbjct 22147 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 22098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632457659275200