Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq64 102 1e-16 seq367 100 4e-16 >seq4 Length=912327 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||| | |||||| |||| ||||| || || || |||| || ||| || | || |||| Sbjct 866596 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAACTAAGCGAAAAAGATGTT 866655 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 | ||||| | | ||| |||| ||||| || ||||||| ||||||||||| || || Sbjct 866656 CATATTTGGGATGCAAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATAGG 866715 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 866716 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 866760 >seq64 Length=711803 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || |||| || ||||||||| |||| | |||| | ||||||| |||||||| Sbjct 22266 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGTGG 22208 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || ||| |||||| |||||||||||| || | |||| | |||||||||||| Sbjct 22207 AATTCAATATAGACAAGAGGATATGCCATTTTCATGTGAAGGTCTTACACCAGATATTAT 22148 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || ||||||||| | ||||| ||| ||| | |||| Sbjct 22147 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 22098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 186/270 (69%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCAC-AGATA 192984 || ||| || || | ||| |||| ||||||| || ||||| | || || || |||| Sbjct 22880 AATGGATACTTTAGCACATGTATTATATTATCCTCATAAACCTTTAGTAACTACTAGATC 22821 Query 192985 T-TGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || || | | | || | |||| || ||| ||||| ||| ||||||||| Sbjct 22820 TATGGAATATCTTAGAT-TTCGTGAATTA-CCTGCTGGAATTAACAGTATAGTTGCTATA 22763 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 193103 || ||||||||||||||||||||||| ||| |||| |||||| | || ||||| Sbjct 22762 TTATGTTATACTGGTTATAATCAAGAAGATAGTGTTATCTTAAATGCTAGTGCTGTTGAA 22703 Query 193104 AGAGGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAACAAA---AAAT 193160 ||||| || ||| | || || ||||| | |||| || | |||| | || || | Sbjct 22702 AGAGGTTTCTTTCGATCTGTATTTTATAGATCTTATAAAGATTCAGAATCTAAGAGAATT 22643 Query 193161 GGAATTATAGAAGAAAAAATAGATATACCT 193190 ||| | ||||||| || | || | |||| Sbjct 22642 GGAGATCAAGAAGAACAATTTGAAAAACCT 22613 >seq367 Length=149558 Score = 100 bits (110), Expect = 4e-16 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 163001 AAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAA 163060 || ||||| ||||| ||| | ||| || ||||| ||| ||| | || || ||| Sbjct 68375 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 68316 Query 163061 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 68315 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 68257 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC--G 163177 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || | Sbjct 68256 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 68197 Query 163178 GCATCAAGATATATTTATACCA 163199 | || ||||||||| ||||| Sbjct 68196 TCCTC--GATATATTTTTACCA 68177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635145523531200