Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq4 107 3e-18 seq64 87.8 2e-12 >seq4 Length=912327 Score = 107 bits (118), Expect = 3e-18 Identities = 171/237 (72%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 180637 AGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCC-GAA 180695 |||||| || ||||||| |||||||||| | ||| | || |||| |||| ||| Sbjct 866887 AGGTATTGATCAATTAAAAGAAGTTATAGATAAGATACGATATTCTCCC-AATGATAGAA 866945 Query 180696 GAATAATCATAGATAGT-TGGAATGTA-TCACAATTACCAGATATGGCTCTTCCACCATG 180753 |||| || || || || |||||| | || ||| ||| | |||||| | || || || Sbjct 866946 GAATTATAAT-GACAGCATGGAATCCAATCGATATT-CCAAAAATGGCTTTACCTCCTTG 867003 Query 180754 TCACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTATCA 180813 ||| ||||| || ||||||||||| || ||| || | ||| |||||| | ||||| Sbjct 867004 TCATTGTTTTGTTCAATTTTATGTAAGCAATGAA---GAATTATCATGCCAACTTTATCA 867060 Query 180814 AAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTTTT 180870 |||| ||| ||| | || | |||||||||| ||||||||| | ||||| || || Sbjct 867061 AAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTGTT 867117 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 180428 GAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAATGATATTGGTGTT 180487 ||||| |||||| | || ||||| | |||||| | || ||| || | | |||| Sbjct 866596 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAACTAAGCGAAAAAGATGTT 866655 Query 180488 AAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGA 180547 | | ||| ||| ||| |||| ||| |||| |||||||||||||| ||| | | Sbjct 866656 CATATTTGGGATGCAAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATAGG 866715 Query 180548 AAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 180592 ||||||| |||||||| || |||||||||||||||||||||||| Sbjct 866716 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 866760 >seq64 Length=711803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGG 201625 ||||| ||| |||| || ||||||||| ||| | |||| | ||||||| |||||||| Sbjct 22266 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGTGG 22208 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTAT 201685 || ||| |||||| |||||||| ||| || ||| | || || |||||||| Sbjct 22207 AATTCAATATAGACAAGAGGATATGCCATTTTCATGTGAAGGTCTTACACCAGATATTAT 22148 Query 201686 AATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTG 201735 ||| ||||| || ||| |||||| | ||||| || ||| |||||| Sbjct 22147 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 22098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655246908360000