Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq367 109 7e-19 seq64 93.3 5e-14 >seq4 Length=912327 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672 ||| | |||||| |||||||||| || || || |||| || ||| || | || |||| Sbjct 866596 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAACTAAGCGAAAAAGATGTT 866655 Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 171732 | ||||| ||| ||| |||| ||||| || ||||||| || || ||||| || || Sbjct 866656 CATATTTGGGATGCAAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATAGG 866715 Query 171733 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 171777 ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 866716 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 866760 >seq367 Length=149558 Score = 109 bits (120), Expect = 7e-19 Identities = 148/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 165163 AAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAA 165222 |||||||| ||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 68375 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 68316 Query 165223 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 68315 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 68257 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC--G 165339 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || | Sbjct 68256 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 68197 Query 165340 GCATCAAGATATATTTATACCA 165361 | || ||||||||| ||||| Sbjct 68196 TCCTC--GATATATTTTTACCA 68177 >seq64 Length=711803 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||||| || |||| || ||||||||| ||| | |||| | ||||||| |||||||| Sbjct 22266 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGTGG 22208 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 || ||| |||||| |||||||||||| || | |||| | |||||||||||| Sbjct 22207 AATTCAATATAGACAAGAGGATATGCCATTTTCATGTGAAGGTCTTACACCAGATATTAT 22148 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 |||||||| || |||||| || | ||||| ||| ||| | |||| Sbjct 22147 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 22098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628499459174400