Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq69 116 7e-21 seq31 91.5 3e-13 seq348 89.7 9e-13 >seq69 Length=3598413 Score = 116 bits (128), Expect = 7e-21 Identities = 286/429 (67%), Gaps = 11/429 (3%) Strand=Plus/Plus Query 142802 TAGAATAAAAATATTGATAGGTATAACTGGCAGCGTAGCTACTGTTAAGTTACCTCATCT 142861 || || ||| || || || ||| || || || || || || |||| ||||| || | Sbjct 701766 TAAAAAAAAGATTTTAATTGGTTGTACCGGTAGTGTTGCAACAATTAAATTACCACAATT 701825 Query 142862 AATAAAAGAATTAACTCGTTTAGAAAATATAGAATTAAGAATAGTCGCTACAGAAAATGC 142921 | || | ||||| ||| | ||| | ||| | |||||||| | || ||||| || Sbjct 701826 AGTAGATAAATTATGGCGTA---ATAATTTTGAAGTGAGAATAGTGGTCACTGAAAAAGC 701882 Query 142922 TATGAAATTT---ACAGACCAAAAAA---CTTTAGGTATTCCTATTTATACAGATAAAGA 142975 || | | || | ||| | || || ||| |||| ||| | |||| || Sbjct 701883 TAAGCATTTCTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGT 701942 Query 142976 TGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAG-GAGAT 143034 || ||| || ||||| || | | | ||||| || |||||||| || |||| || || Sbjct 701943 GGAATGGGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATATTGAT-TTAGTGAAAT 702001 Query 143035 GGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCAACG 143094 |||| ||| | ||| | || || || ||| || ||||| | | |||||||| | | Sbjct 702002 GGGCTGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGTAAAATAGCTAGTG 702061 Query 143095 GTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTA 143154 ||||||| |||||| || |||| | | | | | | ||||||||| | || ||| | Sbjct 702062 GTATATGTGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGG 702121 Query 143155 TTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATAG 143214 | |||||||| || ||||||| ||||||||||||||| |||| | || ||| || Sbjct 702122 TCTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCAACACAGGTAT 702181 Query 143215 ATGCTTTAA 143223 ||| | ||| Sbjct 702182 ATGTTATAA 702190 >seq31 Length=1439309 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| ||||| || |||||||| || |||||||| | ||||||| Sbjct 964121 AGTGTAGATTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTA 964180 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| ||||| | ||| |||| |||||||||||||| ||| Sbjct 964181 CCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCT 964240 Query 81753 TTTATATTTTCAATCGT 81769 || | ||| || || || Sbjct 964241 TTAACATTCTCTATTGT 964257 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 |||||| |||| ||||| |||||||||||||| || ||||| | ||||| | | Sbjct 960786 AGAGTAGATTCTTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCTTCAAGCTGTTTG 960845 Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||| || | | ||||||| | ||| | ||| |||| |||||||||||||| || Sbjct 960846 CCAGCAAAAATCAAACGTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTAGCC 960905 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| || || ||||||| Sbjct 960906 TTTACGTTCTCTATCGTAT 960924 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| ||||| ||||||||||| || || ||||| | ||||| | Sbjct 961535 AGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGTTCTTCCATCTTCAAGTTGTTTT 961594 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | || ||| ||| | ||| | ||| |||| |||||||||||||| || Sbjct 961595 CCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTAGCC 961654 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||| || || |||| Sbjct 961655 TTTACATTCTCTATTGTAT 961673 >seq348 Length=983679 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 ||||||||||||||||||| || || | || ||| | ||| ||||||| ||||| Sbjct 639567 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 639508 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACAT 183316 ||||||| || ||||||||||||||||| ||| ||| |||||| | ||||| || Sbjct 639507 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAACATTGCTGAAT 639448 Query 183317 TT 183318 || Sbjct 639447 TT 639446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903365577734400