Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq199 102 1e-16 seq99 102 1e-16 seq663 98.7 1e-15 seq873 96.9 5e-15 seq438 91.5 2e-13 seq555 89.7 7e-13 seq362 89.7 7e-13 >seq199 Length=2136992 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||| Sbjct 2094250 ATTCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 2094309 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 2094310 TCCCCGCCGGGGAG 2094323 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 2094323 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2094264 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 2094263 TACTACCGAGGAATT 2094249 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2094252 TCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2094311 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 2094312 CCCGCCGGGGAG 2094323 >seq99 Length=495943 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||| Sbjct 26199 ATTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 26140 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 26139 TCCCCGTCGGGGAG 26126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 26197 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 26138 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 26137 CCCGTCGGGGAG 26126 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 26126 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 26185 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 26186 TACTATCGAGGA 26197 >seq663 Length=487541 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 194945 ATTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 194886 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 194885 TCCCCGCCGGGGAG 194872 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 194943 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 194884 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 194883 CCCGCCGGGGAG 194872 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 194872 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 194931 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 194932 TACTACCGAGGA 194943 >seq873 Length=219276 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 168070 TTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 168011 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 168010 CCCCGCCGGGGAG 167998 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 168069 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 168010 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 168009 CCCGCCGGGGAG 167998 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 167998 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 168057 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 168058 TACTACCGAGGA 168069 >seq438 Length=261999 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 65400 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 65459 Query 8718 CCC 8720 ||| Sbjct 65460 CCC 65462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 65400 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 65459 Query 11789 CCC 11791 ||| Sbjct 65460 CCC 65462 Score = 82.4 bits (90), Expect = 1e-10 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 139362 GGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATACTAACGA 139421 ||||| |||||||||||||||||| | |||| |||||||| |||||||||||||| ||| Sbjct 65462 GGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGA 65403 Query 139422 GGA 139424 ||| Sbjct 65402 GGA 65400 >seq555 Length=231301 Score = 89.7 bits (98), Expect = 7e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 8668 TATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAGG 8727 ||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||| || Sbjct 173007 TATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGG 172948 Query 8728 AG 8729 || Sbjct 172947 AG 172946 Score = 82.4 bits (90), Expect = 1e-10 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 11740 TATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAGG 11798 ||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||| || Sbjct 173007 TATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGG 172948 Query 11799 AG 11800 || Sbjct 172947 AG 172946 >seq362 Length=546631 Score = 89.7 bits (98), Expect = 7e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 8668 TATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAGG 8727 ||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||| || Sbjct 211873 TATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGG 211814 Query 8728 AG 8729 || Sbjct 211813 AG 211812 Score = 82.4 bits (90), Expect = 1e-10 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 11740 TATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAGG 11798 ||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||| || Sbjct 211873 TATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGG 211814 Query 11799 AG 11800 || Sbjct 211813 AG 211812 Score = 82.4 bits (90), Expect = 1e-10 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 8667 GTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAG 8726 |||||||||| ||||| |||| ||||| | ||||||||||||||||||||||||| || | Sbjct 212708 GTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGCCGGG 212649 Query 8727 GAG 8729 ||| Sbjct 212648 GAG 212646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652811831337600