Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11 113 1e-19 seq75 104 6e-17 seq43 96.9 8e-15 >seq11 Length=117736 Score = 113 bits (124), Expect = 1e-19 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 ||| |||||| |||||| ||| || ||||| || | |||||||| ||||| || Sbjct 7481 TGACATTGTTGAAAGACATCTGAGGGATGATGATGTAGTATTATTCAATAGACAACCGTC 7422 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA-CATTTC 305411 | | |||||| | || ||||| || |||| ||| ||||| | || || ||||| Sbjct 7421 ATTACATAAATTAAGCATCATGGCACACAAAGCAAAAATATTAGATC-ATAGAACATTTA 7363 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 |||| |||| | ||| |||||| || |||||||| ||||| || || |||||||||||| Sbjct 7362 GATTTAATGAATGTGTTTGTACTCCATATAATGCTGATTTCGACGGCGATGAAATGAATT 7303 Query 305472 TGCATGTACCTCAA 305485 | || || |||||| Sbjct 7302 TACACGTCCCTCAA 7289 >seq75 Length=298487 Score = 104 bits (114), Expect = 6e-17 Identities = 122/161 (76%), Gaps = 8/161 (5%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| || | ||||||||| |||||||| ||||| || ||||| ||| Sbjct 37080 TTCAATCGACAACCGACATTACATAAAATGAGTATGATGGGTCATAGGGTGAAAGTCTTA 37139 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTT 305451 | |||| | |||||||| | ||| | ||| ||||| || |||||||| ||||| Sbjct 37140 CCATGGAGT-ACATTTCGTATGAATCTTAGT---TGTACATCACCATATAATGCCGATTT 37195 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 ||||| |||||||||||| | |||| || ||||||| || Sbjct 37196 CGATGGTGATGAAATGAATTTACATGCCCCACAATCAATGG 37236 Score = 89.7 bits (98), Expect = 1e-12 Identities = 178/255 (70%), Gaps = 14/255 (5%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| |||| | ||||||||| | ||||| || || |||| ||||| | || Sbjct 36636 TTACAATTTCATGTAGCAACATTAGTTGATAACGATATGCCTGG---TATGCCAAGAGCT 36692 Query 304946 ---CAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGG 305001 |||| ||| || | |||| |||| | ||| | |||| | | ||||| || || || Sbjct 36693 ATGCAAAAATCAGGTAAACCTCTAAAAGCTATAAAAGCAA-GATTAAAAGGAAAGGAAGG 36751 Query 305002 TCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCAC 305061 | || ||||| ||| | ||||| |||||||||||||| ||| | | ||| || || Sbjct 36752 CAGAATACGAGGAAATTTGATGGGTAAACGTGTTGATTTCTCTGCTCGTACTGTTATTAC 36811 Query 305062 ACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAA 305118 |||||| || || ||| | || || || | || || || | ||| |||||| ||| Sbjct 36812 TCCTGATCCT-AATTTACGGATTGATCAAGTGGGCGTACC--TAGAAGCATTGCTCAAAA 36868 Query 305119 ACTAACATTTCCAGA 305133 |||||||||| || Sbjct 36869 TTTAACATTTCCTGA 36883 >seq43 Length=2749190 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 111054 TCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCT 111113 || ||||||||||| |||||||| ||||| | |||||||||||| |||||||||||| Sbjct 1505401 TCTCAAGTTGAAACAGGAACTCCATATATGCTTTATAAAGATCATTGTAATCGCAAATCA 1505342 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| ||| |||||||||| || ||||||||| || Sbjct 1505341 AATCATCAAAATATAGGAACAATAAAAAGTAGTAATTTATG 1505301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186751367602440