Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq108 138 7e-28 seq31 105 4e-18 seq2544 89.7 3e-13 >seq108 Length=811940 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| || || |||||||| || ||||||||| || || ||||| || Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 251253 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| ||| | || || | |||||| || ||||| ||||| | ||||||||| | || Sbjct 251254 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 251313 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||||| | || |||| || | ||| || | || || Sbjct 251314 ATTCCTTCCTTGTCTTGAATTTTC-GCTTTTACATTTTCAATGGTATCTGAGGCCTCTAC 251372 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||||||||| || ||||| |||||||||||||| Sbjct 251373 CTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 251420 Score = 129 bits (142), Expect = 4e-25 Identities = 176/242 (73%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 33511 ATAAAATCGTC-ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTAT 33569 || ||||| || |||||||| | ||| | || | || ||||| |||||||| || Sbjct 248986 ATGAAATCATCGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAAT 249045 Query 33570 GTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTG 33629 || ||||| || ||||| ||| | || |||||||||||||| ||||| ||||| | ||| Sbjct 249046 ATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTG 249105 Query 33630 CTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGT 33688 ||||| | || | |||||||||||| |||||| || || |||| || | |||| Sbjct 249106 TTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTT-TGCTTTTACATTTTCAATTGTGT 249164 Query 33689 CGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 || | ||| || |||| || || |||||||| || | || || ||||| || |||| Sbjct 249165 CGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCA 249224 Query 33749 TA 33750 || Sbjct 249225 TA 249226 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| || || |||||||| || |||||||| || || ||||| || Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 250569 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || |||| ||||| || ||||||||||| | ||| ||||| | || Sbjct 250570 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 250629 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || |||||| || | ||||| || | || ||| || ||| || Sbjct 250630 ATACCTTCTTTATCCTGAATTTT-AGTCTTAACATTTTCAATAGTATCGGATGCTTCAAC 250688 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| ||||| | || || || || || |||||| Sbjct 250689 TTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCATA 250737 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || ||||| || ||||| || | || |||||||||||||| |||||| Sbjct 251002 TCTTTTTGAATATTATAATCAGAAAGTGTACGACCATCTTCCAATTGTTTTCCAGCAAAA 251061 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| ||||| | || | ||||||||| || |||||| | || ||||| Sbjct 251062 ATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATCCTGAATTTT-AGCTTTAACATT 251120 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| || | ||| || || | || || ||||| || || | ||||| || Sbjct 251121 TTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTGAC 251180 Query 33738 AAAGATCTGCAT 33749 ||| || ||||| Sbjct 251181 AAAAATTTGCAT 251192 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||||||||| || || || | || |||||||||||||| ||||| Sbjct 250774 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAG 250833 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| || || | || | |||||||||||| ||| || | || |||| Sbjct 250834 ATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTT-GGCTTTTACATT 250892 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| ||| | ||| || |||| || || || || || || | ||||| || Sbjct 250893 TTCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGAC 250952 Query 33738 AAAGATCTGCATA 33750 || || |||||| Sbjct 250953 GAAAATTTGCATA 250965 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || |||||||| || || || | || ||||| ||||| || ||||| Sbjct 249263 TCTTTTTGGATATTATAATCGGAAAGAGTACGACCATCTTCCAACTGTTTACCAGCAAAG 249322 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||| || || |||| | |||||||||||| |||||| || || |||| Sbjct 249323 ATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTGTCTTGAATTTT-TGCTTTTACATT 249381 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || | ||| || |||| || || |||||||| || | || || || Sbjct 249382 TTCAATGGCATCATAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGAC 249441 Query 33738 AAAGATCTGCATA 33750 ||| || |||||| Sbjct 249442 AAAAATTTGCATA 249454 >seq31 Length=1439309 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| |||||||| || || ||||| |||||||| | | || || | ||| Sbjct 964779 ATGAAGAGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTG 964838 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||| |||||||||||||| || |||||| | || | || ||||| || ||| || Sbjct 964839 TTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTT 964898 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | |||| || | ||||| | ||| || || | ||||| ||||| |||| Sbjct 964899 -AGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTG 964957 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || |||||||||||||| Sbjct 964958 TTAAAGTCTTAACAAAGATCTGCAT 964982 Score = 96.9 bits (106), Expect = 2e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| ||||| ||||| || || || ||||| |||||||| | | | || Sbjct 961002 AATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGTTCTTCCATCT 961061 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||||||||| ||||||||||| ||||||||||| | || | |||||||| || Sbjct 961062 TCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATTCCTTCTTTATCT 961121 Query 33658 GCAATTTT 33665 |||||| Sbjct 961122 TGAATTTT 961129 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || ||||| || || || |||||||| || |||||||| ||||||| | | | || Sbjct 960546 AATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAGAGTGTTCTTCCATCT 960605 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||||||||| ||||||||||| || |||||||| | || | |||||||| || Sbjct 960606 TCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCT 960665 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || | || || | || | || || | ||| || |||| || || || Sbjct 960666 TGAATCTT-AGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAATAGT 960724 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| |||||||| ||||| Sbjct 960725 CTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| ||||| ||||| || || || ||||| |||||||| | | | || Sbjct 961295 AATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGTTCTTCCATCT 961354 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || |||||||||||||| || || || | || | ||||||||||| Sbjct 961355 TCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGAATTCCTTCTTTGTCT 961414 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || | | || | || | || || | ||| ||||||| || || || Sbjct 961415 TGAATCTT-AGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACGTCAAGTGTAATAGT 961473 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| |||||||| ||||| Sbjct 961474 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 961506 >seq2544 Length=277 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||||||||| || || || | || ||||| || || || ||||| Sbjct 246 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTACCAGCAAAG 187 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||| ||||| | || | |||||| || || |||||| |||| ||||| Sbjct 186 ATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTATCTTGAATTTT-AGTTTTAACATT 128 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || | ||| || || | || || ||||| || || | |||||||| Sbjct 127 TTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTAC 68 Query 33738 AAAGATCTGCATA 33750 ||| || |||||| Sbjct 67 AAATATTTGCATA 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328687815436800