Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq108 120 3e-22 seq2544 113 4e-20 seq87 95.1 1e-14 seq31 84.2 2e-11 seq43 82.4 7e-11 >seq108 Length=811940 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| || ||||||| |||| ||||||||||| || || || | ||||| Sbjct 250518 CAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACG 250577 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||||||||| | | | || | | ||||||||| ||||| || ||||| Sbjct 250578 ACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTC 250637 Query 132025 TTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 |||||| | | |||| || | ||| | ||| | |||||||| | || ||||| | | Sbjct 250638 TTTATC-CTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAACTTCTAAAG 250696 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | ||||| || || ||||| || | |||||| ||||| Sbjct 250697 TAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 105 bits (116), Expect = 6e-18 Identities = 162/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTAC 131963 ||| ||||| || ||||||| |||||||||||||||| || || || | | || |||| Sbjct 251202 CAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAAT-GTAC 251260 Query 131964 GCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTT 132023 | |||||| || |||||||| | | |||| | | || |||||||| || || |||| Sbjct 251261 GTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTT 251320 Query 132024 CTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 | || || |||||| ||| | | ||| | ||||| | | ||| || || | | Sbjct 251321 CCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACCTCCAGAG 251380 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTAT 132130 | | |||||||| |||| ||||| | || |||||||||| |||| Sbjct 251381 TTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGA-TTAT 251426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| ||||||||||| ||||| ||| | ||||| |||||| Sbjct 250755 AACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTC 250814 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | | |||| | | |||||| || ||||| || |||||||| || Sbjct 250815 CAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 250874 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | ||| | ||||||| | || ||||| | || | || || Sbjct 250875 AATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTT 250934 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| | |||||| ||||| Sbjct 250935 TCCCGTAAGAGTTTTGACGAAAATTTGCAT 250964 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | || ||||||||||| || || || | ||||| | Sbjct 250978 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTACGACCA 251037 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | | || | | ||||||||| ||||| || ||||||||| Sbjct 251038 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTA 251097 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||||| | | || ||||| | || | Sbjct 251098 TCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATA 251157 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | ||||| ||||| Sbjct 251158 GTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCAT 251192 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || || | ||||| |||||| | ||||| || | | Sbjct 249032 GATTCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCA 249091 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||||||||| ||||| || |||||||| || ||||||| ||| | Sbjct 249092 AAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACA 249151 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || |||| | || ||||| | || | |||||||| || ||||| || Sbjct 249152 TTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTG 249211 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 249212 ACAAAAATTTGCAT 249225 >seq2544 Length=277 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | || ||||||||||| ||||| ||| | ||||| | Sbjct 270 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCA 211 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| ||||| | | |||| || | ||||||||| ||||| || ||||| ||| Sbjct 210 TCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTA 151 Query 132029 TCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || | | |||| |||| ||| | ||| | ||||| | | || ||||| | || | Sbjct 150 TC-TTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAAT 92 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||||||| || || ||||| Sbjct 91 TGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 56 >seq87 Length=1479609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| || ||||| | ||||| |||||| | || || || | | | | Sbjct 253100 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 253159 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | ||||| || ||||| || ||||| ||||||||||| |||||| ||||| | || Sbjct 253160 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 253219 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | | || ||||| | || | |||||||| |||| |||||| | | Sbjct 253220 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 253279 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 253280 ATATCTGCAT 253289 >seq31 Length=1439309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| |||||||| || || | || | |||||| || |||||||| | | Sbjct 964127 GATTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCA 964186 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| ||| |||||||||||||| || ||||||||||| ||| || ||| | Sbjct 964187 AAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACA 964246 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | || ||||| | || | || |||||||| |||||||| Sbjct 964247 TTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTG 964306 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 964307 ACAAAGATTTGCAT 964320 >seq43 Length=2749190 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 146883 TAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCT 146942 ||||| |||| || ||||||||||| || | ||| || | ||| ||| | |||||| Sbjct 1504505 TAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTTCTTGTATAGATATTGCT 1504564 Query 146943 AGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCAT 147002 ||| | || || | ||| |||||||| ||||| ||||| || || | ||| || ||||| Sbjct 1504565 GGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCAGTTGATGCTGTTGGCAT 1504624 Query 147003 GTACGCCACCAACAATGAATTTC 147025 || | ||||| ||||||| Sbjct 1504625 AGGTGCAATTAACAAAGAATTTC 1504647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476587131134400