Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq31 102 7e-17 seq108 98.7 8e-16 >seq31 Length=1439309 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| ||||| | ||||| ||||| ||||| | ||| ||| | Sbjct 960758 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960699 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || ||| || ||| || |||||||| | || |||||| Sbjct 960698 GGATACAATAGAGAACGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960639 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | |||| ||| || |||||| | |||||| | ||| | |||||||| Sbjct 960638 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGATTACAA 960579 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||||||||| || || |||||||| | ||||||||| Sbjct 960578 TATCCAAAAAGAATCTACACTGCACTTGGTATTGAGACTTCGAGGAGGA 960530 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| | ||||| |||||||||||| | ||| ||| | Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| || ||| || |||||||| | || |||||| Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 964201 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || |||||| |||||||| | |||| | ||||| ||| Sbjct 964200 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 964141 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || |||||||||||||| || |||| ||||| | ||||||||| Sbjct 964140 ATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGGA 964093 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| ||||| | ||||| ||||| ||||| | || ||| | Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || || || ||| ||||||||||| | ||| ||| || Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 961388 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | |||| ||| || |||||| |||||||| | ||| | ||||| || Sbjct 961387 ACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAA 961328 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || ||||||||||| || ||||| |||||||| | ||||||||| Sbjct 961327 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGA 961279 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | ||| ||| |||||| | | |||| ||| || ||||| ||||| Sbjct 964455 GACAAAGAAGGAATTCCCCCTGACCAACAACGTTTGATTTTTGCTGGTAAACAGCTAGAA 964396 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| | ||||| || || ||||| ||||||||||| |||||||| ||| Sbjct 964395 GATGGAAGAACTCTCTCAGATTATAATATCCAAAAGGAATCTACACTCCATTTAGTGTTG 964336 Query 106473 AGGTTACGAGGAGG 106486 || | ||||||| Sbjct 964335 AGACTTAGAGGAGG 964322 >seq108 Length=811940 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| ||||| || | || || || || ||||| | ||| ||| | | Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || || |||||| || |||||||| | || |||||| Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAA 250617 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || || | |||| ||| || ||||| | |||||| || | ||| | || |||| | Sbjct 250616 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGG--ATTATA 250559 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 | || ||||||||||| |||||||||||||||||| | || |||| ||| Sbjct 250558 ATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 250509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| |||||| | ||||| || || ||||| | ||| ||| | Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || ||| |||||| || |||||||| | || ||||| Sbjct 251133 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCA 251074 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTAC 106436 ||| || | |||| ||| || |||||||| |||||| || | ||| | ||||| Sbjct 251073 ACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTT--CTGATTAT 251016 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || ||||||||||||||||| ||| | || ||| Sbjct 251015 AATATTCAAAAAGAATCTACACTTCATCTTGTTTTG 250980 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||||||||| || || || || || |||| ||| || Sbjct 251420 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTAGAGGCCTCA 251361 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||| ||||| | || ||||| Sbjct 251360 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 251301 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||||| | || | ||| || |||||| |||||||| | | | ||| ||||| | Sbjct 251300 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTAT--CTGATTATA 251243 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 | || |||||||| || |||||||||||||||||| | || |||| ||| Sbjct 251242 ATATTCAAAAAGAGTCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 251193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || | || || || || ||||| | ||| ||| | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||||| ||||||||||| | || ||| ||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || || || | ||| || ||||| || |||||| | ||| | |||||| || Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||||||||||||||| ||| | || ||| Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGTTTTG 249241 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 106335 GTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTAT 106394 || ||| ||||||| ||||||||||| | || ||| ||||| || || || | | Sbjct 249606 GTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAACAGAGACTGATCTTT 249547 Query 106395 GCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCT 106454 || || ||||| || |||||| | ||| | ||||||||| || |||||||||||| Sbjct 249546 GCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAAAAGAATCT 249487 Query 106455 ACACTACATTTAGTATTG 106472 ||||| ||| | || ||| Sbjct 249486 ACACTTCATCTTGTTTTG 249469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402309790296320