Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq108 141 9e-29 seq31 120 3e-22 seq2544 114 1e-20 seq1683 114 1e-20 >seq108 Length=811940 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| | ||||| || | ||||| || ||||| |||||||| || || || Sbjct 250508 TTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCG 250567 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || || || || |||||||| || ||||||||||| | ||| |||||||| | Sbjct 250568 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAG 250627 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCC 134663 | || |||||||| || |||| |||| || | | | | |||| || ||||| | ||| Sbjct 250628 GAATACCTTCTTTATCCTGAA-TTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCA 250686 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | |||||| ||||| || || | ||| ||||||||||||||||| Sbjct 250687 ACTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || ||||| || || ||||| |||||||| || || || | Sbjct 248999 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAA 249058 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||||| || ||||| ||||| | ||| ||||| || || Sbjct 249059 AGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGA 249118 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||||||| ||| || || | ||||||||| | ||| || Sbjct 249119 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACT 249178 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| |||||||| || | ||| || || ||||||||||| Sbjct 249179 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249225 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || || || || || ||||| |||||||| || || || || || || Sbjct 250975 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTACGA 251034 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || ||||||||||| | ||| |||||||| || || |||||| Sbjct 251035 CCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCT 251094 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| ||| || || | || || || | ||| || || | |||| Sbjct 251095 TTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTA 251154 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || || | ||||| || |||||||||||| Sbjct 251155 ATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCATT 251193 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || || || || || ||||| ||||| || || || ||| || || || Sbjct 249236 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAAAGAGTACGA 249295 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | |||||| || ||||| |||| | ||| || || ||||| || |||||| Sbjct 249296 CCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCT 249355 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||||||| ||| || || | | || | | ||| || || |||||| Sbjct 249356 TTGTCTTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACTTCAAGAGTA 249415 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || | ||| || || ||||||||||| Sbjct 249416 ATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249453 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||||| || || || ||||| |||||||| ||||| ||| || || | Sbjct 250747 AGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGG 250806 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || ||||| ||||| | ||| || || || || || |||||| Sbjct 250807 CCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCT 250866 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||| || || | || ||||| | ||| || || |||||| Sbjct 250867 TTGTCTTGAATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCAAGAGTA 250926 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | |||||| |||||||||||||| Sbjct 250927 ATAGTCTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 250964 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| | ||||| || | ||||| || || || |||||||| || || || Sbjct 251192 TTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAG 251251 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || || ||||| || ||||| ||||| | |||||||| || | Sbjct 251252 ATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTG 251311 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||| || || | || || || | || | Sbjct 251312 GAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTA 251371 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| || |||||||| || || ||||| || || || ||||| Sbjct 251372 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 251420 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || || || || || ||||| |||||||| ||||| ||| || || || Sbjct 249464 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGA 249523 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | |||||| || ||||| |||| | ||| || || ||||| || |||||| Sbjct 249524 CCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCT 249583 Query 134616 TTTTCTTGAATTTTTTGTTTGAC 134638 || |||||||||||| ||| || Sbjct 249584 TTGTCTTGAATTTTTGCTTTTAC 249606 >seq31 Length=1439309 Score = 120 bits (132), Expect = 3e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || |||||||| |||| ||| || | ||| || || ||||| ||||| || ||||| || Sbjct 960527 CTCTCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATC 960586 Query 134543 GCCAACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 || |||| || || || ||||| || ||||||||||| || |||||||| Sbjct 960587 T--AAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCA 960644 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || |||||||| |||||||| || ||| || || | ||| || || | | Sbjct 960645 GGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCT 960704 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| || || || || | |||||| || || ||||||||| Sbjct 960705 TCAACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 960758 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||| | |||||||| || || || || || ||||| || ||||| || || || | Sbjct 960757 TTCCTCCGCGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAG 960816 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | | | || || ||||||||||| |||||||||||||| || ||||| || Sbjct 960817 AGAGTGTTCTTCCA-TCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGA 960875 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| |||||||| || || || || | || || || | ||| Sbjct 960876 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCA 960935 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || || | |||||| || || ||||||||| Sbjct 960936 ACTTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 960986 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||| |||| ||| || | || || || ||||| || ||||| || || || | Sbjct 961278 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961337 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | | | || || || ||||| || |||||||||||||| || || || || Sbjct 961338 AGAGTGTTCTTCCA-TCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGG 961396 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| |||||||| || || || || | || || || | ||| Sbjct 961397 GGAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCA 961456 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || || | |||||| || || ||||||||| Sbjct 961457 ACGTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 961507 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 || || || || ||||| |||||||| || || || | || | || || || Sbjct 964777 AGATGAAGAGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGT 964836 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || |||||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 964837 TGTTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATC 964896 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || || || || | |||||| || | ||| || || | || || ||||| || Sbjct 964897 TTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCT 964956 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||||||| ||||| || || |||||||| Sbjct 964957 GTTAAAGTCTTAACAAAGATCTGCATTTT 964985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| |||| |||||| | || || || ||||||||||| || || || || | Sbjct 964322 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 964381 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || |||||||| || |||||||||||||| || || || || || Sbjct 964382 AGAGTTCTTCCA-TCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGG 964440 Query 134606 TATGCCTTCTTTTTCTTGAATTTT 134629 || |||||||| |||||||| || Sbjct 964441 AATTCCTTCTTTGTCTTGAATCTT 964464 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||| |||| ||| || | || || || ||||| || ||||| || || || | Sbjct 960985 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961044 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | | | || || || ||||| || ||||||||||| ||||||||||| || Sbjct 961045 AGAGTGTTCTTCCA-TCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGA 961103 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTT 134629 || || |||||||| ||||||||||| Sbjct 961104 GGAATTCCTTCTTTATCTTGAATTTT 961129 >seq2544 Length=277 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || || || || || ||||| |||||||| ||||| ||| || || | Sbjct 273 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGG 214 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || ||||| |||| | ||| ||||| || || || ||||| Sbjct 213 CCATCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCC 154 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| ||| || || | ||| || || | ||| || || | |||| Sbjct 153 TTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTA 94 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || | |||||| || || |||||||| Sbjct 93 ATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 56 >seq1683 Length=220 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || || || || || ||||| ||||| || || || || || || || Sbjct 216 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAGAAAGAGTACGA 157 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || ||||||||||| | || || || || || || |||||| Sbjct 156 CCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACCTTCT 97 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| || || || | || || || | ||| || || |||||| Sbjct 96 TTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCAAGAGTA 37 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711 || ||||| || || | ||| || |||||||||||| Sbjct 36 ATAGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505372877380800