Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq43 197 2e-45 seq50 152 7e-32 >seq43 Length=2749190 Score = 197 bits (218), Expect = 2e-45 Identities = 229/309 (74%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681 ||| || || ||| || | ||||||| ||| || || || |||||||| | | ||| Sbjct 1504427 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCT 1504486 Query 68682 CTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCT 68741 || |||||| ||| | | ||| ||||| || | |||||| || || || | ||||| Sbjct 1504487 TTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCT 1504546 Query 68742 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGC 68801 | || || ||||| ||||| |||||||| | ||||||||||||||| | |||||| || Sbjct 1504547 TCTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 1504606 Query 68802 AGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGAT 68861 ||||||||| |||||||||||||| | || ||| |||||||| |||||| | || Sbjct 1504607 AGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 1504666 Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921 ||| | ||| | | |||||||||| | || || ||| | | ||||||| | |||||| Sbjct 1504667 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAGCATTCCACATATCGTA 1504726 Query 68922 TTGTAGAAT 68930 ||||| ||| Sbjct 1504727 TTGTAAAAT 1504735 Score = 181 bits (200), Expect = 1e-40 Identities = 229/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || ||||||||||||||||| | ||| || | |||||| | |||||||||||||| | Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 ||||| || | |||| |||| |||||||||||| ||||| | |||| || || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || || ||||| | ||| ||||| | |||||||||| |||| ||| |||| || Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1506635 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 | |||||||| |||||| | | | || || || || || || ||| || Sbjct 1506636 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATG 1506695 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAG 69959 || ||||| | ||| ||||||||||| || || || || ||||| || ||| |||||| Sbjct 1506696 AGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAAT 1506755 Query 69960 AAGAAAACAGCT 69971 || ||||||||| Sbjct 1506756 AA-AAAACAGCT 1506766 Score = 150 bits (166), Expect = 2e-31 Identities = 135/167 (81%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 ||||||| || ||| ||||||| |||||||||||| |||| |||||| |||||| || Sbjct 1505711 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 1505770 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 ||||||| || | ||| | ||||| |||| ||||||||||||||| ||||| || |||| Sbjct 1505771 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 1505830 Query 69623 AAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||||| ||| || | ||||| | |||||||||||| || ||||| Sbjct 1505831 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 Score = 141 bits (156), Expect = 1e-28 Identities = 237/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| |||||||||||||| |||||| ||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||| |||||||| | ||||| | || | ||| || | | ||||| ||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 1505196 Query 69236 AATCAAATCGTCCATCTATA------ACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 |||||||| | || ||| ||||||||||| | || | || |||| ||||| Sbjct 1505197 AATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 1505256 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || || || |||| | | | | ||| || | | |||||||||| |||||||| || Sbjct 1505257 AGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTTT 1505316 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 | || || || | |||||| ||||| || ||||| || || ||||| ||| Sbjct 1505317 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAGCATAT 1505376 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 | ||||| || ||||||| ||||| | ||||| | |||| Sbjct 1505377 ATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 1505419 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||| | |||| | |||||| ||||||||||| || ||||| ||||| || Sbjct 1504847 ATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCACCATA 1504906 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | |||||| || || | |||| || | |||||||||| ||| || |||||||| Sbjct 1504907 ATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATA 1504966 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | || |||||||||||| | || |||| |||||||| Sbjct 1504967 GCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 Score = 104 bits (114), Expect = 3e-17 Identities = 198/288 (69%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 69948 TATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAA 70007 ||| || |||| || | || ||||||||||| || || |||| | ||| ||| | Sbjct 1506810 TATAATTTTAAAAAATATAC--CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAG 1506867 Query 70008 TGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGA 70067 ||| |||||||| || || || | ||| || | | ||| || ||||| |||||| Sbjct 1506868 TGTTGGAGATGCATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTT 1506927 Query 70068 TTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTT 70126 | ||||| ||| ||| || | | || || | ||| ||||||||||| |||| || Sbjct 1506928 GTTAATATCTTCACC-ATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGGTCTTT 1506986 Query 70127 CTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAAT 70186 | || ||| || |||||| || | || | |||| || ||||| || ||||||| Sbjct 1506987 CAACTACTTTTCCATGTATTTTTAATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAAT 1507046 Query 70187 AGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234 | || || ||| ||||| || ||||| || ||||||||| |||| Sbjct 1507047 AATTATAACTAAAATCTCTATCATAAATTATTGCAGAATTTAACTTAT 1507094 >seq50 Length=3512070 Score = 152 bits (168), Expect = 7e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 |||||||| ||||||| | ||||||||||||||| | ||||| || || | ||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || ||||| | ||| || || |||||||| ||| || ||||| ||| | | ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || ||||||||| ||| ||||||||||| || ||||| ||||||| |||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 40067 TCATCGGGTGTCAATTTATTCCAGTCA 40093 ||| || || || |||||||| ||| Sbjct 996629 TCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 107 bits (118), Expect = 3e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | ||| || |||||| ||||| ||||| ||||| | ||||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || ||||| ||| ||| |||||| || ||||||||||| ||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||| | | || || | | | |||| | |||||| || ||||||| || Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||| || ||||| |||| |||| ||||| ||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAA 996340 Score = 104 bits (114), Expect = 3e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||||| | ||||||||| || |||||||||||||||||||| || ||| ||| Sbjct 995796 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 995855 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | || ||| ||||| ||||| | || ||| |||| || || || | ||| |||| ||| Sbjct 995856 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 995915 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || | || || || | || || ||||| ||| ||| | ||| || | | Sbjct 995916 ATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTTTGTACAATG 995975 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||| |||||||| || || || |||||||||| |||| Sbjct 995976 TGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686874111105600