Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq205 176 4e-39 seq50 136 3e-27 seq4 132 4e-26 >seq205 Length=424314 Score = 176 bits (194), Expect = 4e-39 Identities = 234/323 (72%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 19210 TTATTA--CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTT 19267 |||||| ||| ||||| || | || | ||| |||||| ||| || |||||| ||| Sbjct 262063 TTATTAATCCAGATTGGGATTTTCAAAAAATGGGAATTGGTGGACTGGATAAAGAATTTA 262122 Query 19268 CTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAAT 19327 ||| || ||||| ||||| |||| || || |||||| | |||| | ||| ||||| Sbjct 262123 CTGCTATTTTTCGAAGAGCCTTTGCATCCCGAGTTTTTCCGCCAGAGATTGTTACACAAT 262182 Query 19328 TGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACAT 19387 | || ||||||||||| ||| |||| |||||||| ||||| || |||||||||| Sbjct 262183 TAGGTTGTAAACATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACAT 262242 Query 19388 TAATTGCGAGAGAACT---TAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATG 19444 |||| || ||| || | | || ||| | | | | ||||| |||||||| |||| Sbjct 262243 TAATGGCTAGACAAATAGGAACTATGTTAAATGCTAGAGAACCT---AAAATTGTTAATG 262299 Query 19445 GTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTG 19504 ||||| ||||||| |||||||||| || || |||| ||| | || | || |||| Sbjct 262300 GTCCTCAAATCTTGGATAAATATGTCGGAGAAAGTGAAGCCAATATTAGAAGATTATTTG 262359 Query 19505 CTGACGCTGAAGAAGAACAAAAA 19527 |||| |||||||| ||| ||||| Sbjct 262360 CTGATGCTGAAGAGGAAGAAAAA 262382 Score = 102 bits (112), Expect = 6e-17 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--TCTGG-T 19605 || || || || || | |||||| | || || || |||||| ||||| | ||| | Sbjct 262481 TTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAGTCTCGAGGTAGTGTGGCT 262540 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| ||||| ||||| |||||||| |||||| | || ||||| | || ||||| Sbjct 262541 GGTAATACAGGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGATGGTGTA 262600 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||| | ||||||||| | |||||||| ||||||||| || || | ||||| Sbjct 262601 GAACAATTAAATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGATAGATGAA 262660 Query 19723 GCCTTATTACGACCCGGTCGGTTGGA 19748 |||||||||||||| ||| | || || Sbjct 262661 GCCTTATTACGACCTGGTAGATTAGA 262686 >seq50 Length=3512070 Score = 136 bits (150), Expect = 3e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||||||||||||||||| || || || |||||||| || || || || |||||| Sbjct 996630 GAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCTTCTGATGGAATCGTCAAT 996571 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | ||| || ||| |||||||| ||| || |||| ||||| ||||| ||| Sbjct 996570 GAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTCTAT 996511 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || |||||| ||||||| |||||| ||||||| |||||||| | | | || ||||| Sbjct 996510 GGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTATTCTTTGTTAATTGATACA 996451 Query 44009 TACATCAAAGATG 44021 ||||| ||||| Sbjct 996450 TACATTGCAGATG 996438 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| ||| ||||| || ||||| ||||||| | ||| || ||||||||||| Sbjct 996847 AGAAAATCCACGTAGATTTGTTGTTTTTCCTATTCAATGGCCTGATATTTGGCAAATGTA 996788 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 |||||||| | || || |||||||||| |||||||| ||| | |||||| Sbjct 996787 TAAAAAAGCTGAAGCATCTTTTTGGACAGTGGAAGAAGTGGATCTTTCTAAAG 996735 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| ||||||||||| |||||| ||||||| || ||||| || |||||||| ||||||| Sbjct 995690 AAAATCCGTTTGATTTCATGGAACATATTTCTTTAGAAGGTAAGACAAACTTCTTTGAAA 995631 Query 44553 AACGCGTTGGAGAATATCA 44571 || || ||||||||||| Sbjct 995630 AAAAAGTGGGAGAATATCA 995612 >seq4 Length=912327 Score = 132 bits (146), Expect = 4e-26 Identities = 184/253 (73%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || ||||||||||| | ||||||||||| | | || ||| |||||||| Sbjct 866548 TTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATGG 866607 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||| ||||| | || ||||| |||||| || |||| || || || |||||| || Sbjct 866608 TTTATTAAAGGATCCACAAATGCAAAGAAACTAAGCGAAAAAGATGTTCATATTTGGGAT 866667 Query 40812 GCGCACAGTTCTAAA-ACATATTTG--TCTAGCATAGGATTACAAGATAGGGATGAAGGT 40868 || | ||||| | | || | ||| | | | ||||| |||||||| ||||| Sbjct 866668 GCAAATAGTTCACGTGAGTTCTTAGATTCTTG--TGGTTTTACA-GATAGGGAAGAAGGA 866724 Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 ||| | |||||| ||||||||||||| | | |||||||||| |||| |||| | |||| Sbjct 866725 GATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATATG 866784 Query 40929 TACTCTGATTATA 40941 ||| ||||||| Sbjct 866785 TACAAAGATTATA 866797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397436430260200