Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq4 120 2e-22 >seq4 Length=912327 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 112063 TATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCT 112122 |||||||| ||| | ||||||||||| |||||||||||||| || | |||||| | Sbjct 866774 TATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTTCC 866715 Query 112123 GTATCTGGAAATTGCTCTCTATTC-AACAAATCACTTCTAATATGAGGATTCCAAATCTT 112181 |||||| ||| | | | || || || |||| | | ||| | || |||||| | Sbjct 866714 CTATCTGTAAAAC-CACAAGAATCTAAGAACTCACGTGAACTATTTGCATCCCAAATATG 866656 Query 112182 CACTCCTTTAGATGATAACTCTCTT-GCATTTGTGGATCCTCTAATAAACCATAGCAATT 112240 || |||| | | | | |||| ||||||||||||||| |||||||||||| ||||| Sbjct 866655 AACATCTTTTTC-GCTTAGTTTCTTTGCATTTGTGGATCCTTTAATAAACCATAACAATT 866597 Query 112241 CTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 | ||||| || |||||||| | || | ||| ||||||| | |||||| Sbjct 866596 CCTCCACTACACCTTTCCAAAATACGCGTTTTGTAGTTAATAATGGAAA 866548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391926301578520