Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq69 181 1e-40 seq178 91.5 2e-13 seq240 84.2 3e-11 >seq69 Length=3598413 Score = 181 bits (200), Expect = 1e-40 Identities = 289/409 (71%), Gaps = 12/409 (3%) Strand=Plus/Plus Query 89004 aaaaaTATTAATAGGTGTCACTGGCAGTGTTGCTACTATTAAATTACCGGAGTTGCTAGA 89063 ||| || ||||| ||| || || |||||||| || ||||||||||| | || |||| Sbjct 701772 AAAGATTTTAATTGGTTGTACCGGTAGTGTTGCAACAATTAAATTACCACAATTAGTAGA 701831 Query 89064 TAAATTATTAGGACTAGGTAATATTGAAATACGTATAGTAGCCACGAAAAACGCTACTCA 89123 |||||||| || || |||| ||||| | | ||||| | ||| |||| |||| || Sbjct 701832 TAAATTAT--GGCGTAA-TAATTTTGAAGTGAGAATAGTGGTCACTGAAAAAGCTAAGCA 701888 Query 89124 TTTCT---ATGATCAAAAAATAT----AATAATGCCTATTTACACCGATTCAGACGAATG 89176 ||||| | || | || | | ||| | ||| | ||| ||| ||||| Sbjct 701889 TTTCTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGTGGAATG 701948 Query 89177 GTTTACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAG-GAGGTGGGCTG 89235 | | | ||| |||| | |||||||| |||||||| || |||| || ||||||| Sbjct 701949 GGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATATTGAT-TTAGTGAAATGGGCTG 702007 Query 89236 ATATATTTATTATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGGTATAT 89295 || ||||| | || || ||| || ||||||||||| | || ||||||| |||||||| Sbjct 702008 ATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGTAAAATAGCTAGTGGTATAT 702067 Query 89296 GCGACAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCAAAGCCCCTTATTTTTT 89355 | || || || |||||| | | | | || |||||| || |||||| | | |||| Sbjct 702068 GTGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGGTCTTTT 702127 Query 89356 GTCCTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACA 89404 |||||||||||||||| |||||||||||||||| |||||| | |||| Sbjct 702128 GTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCAACACA 702176 >seq178 Length=756170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 || ||| || |||| | |||| ||||||||||||| | |||||| |||||||| Sbjct 33321 GCTTTTCTTCCAGCAATGGTAAACAGTTTTATACATGTTCTTATGTATTCATATTACGGT 33262 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATC 32951 || | ||| | || || ||| | |||||||| ||||||||||||||||| || || Sbjct 33261 TTGGCCGCATTGGGACCCTCCGTAGCTAAATATCTCTGGTGGAAAAAATATTTGACGATT 33202 Query 32952 ATACAATTGATGCAGTTT 32969 | |||||||| |||||| Sbjct 33201 CTTCAATTGATCCAGTTT 33184 >seq240 Length=1410419 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/262 (67%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 46890 TGTATATTTGTTAATGTCGCGTCTAAATGCCGTTTAGCAGATAGTAATTATAAGGAACTA 46949 |||||| |||||||||| || ||| || | | |||||| ||||| | ||||| Sbjct 999353 TGTATAATTGTTAATGTTGCTAGTAATTGTGGACTTACAGATACAAATTACAGAGAACTT 999294 Query 46950 GTTGAGTTACACAACAAATATTATTGCAATG---GTTTGCGTATAATGGCTTTTCCATGT 47006 || | ||| | | ||||| || | || | |||| | || |||| ||||||| Sbjct 999293 GTACAATTATATGAAAAATACAATGGAAAGGAAGGTTTAAGAATTTTGGCATTTCCATCA 999234 Query 47007 AACCAGTTTGGTAACCAAGAACCAGGTAATGCGATAGAAATAATGAATACCATGAAAAAA 47066 || ||||||| ||||||||||| | | | |||||| | | | |||||| Sbjct 999233 AATGAGTTTGGCGGTCAAGAACCAGGAACCTCTACAGAAATTTTAGAGTTTGTCAAAAAA 999174 Query 47067 TATTCTATATTTTTTAACGTATCTGAAAAAATACTGGTTAATAGTATTTATGCGCATCCT 47126 ||| | | |||| || ||| ||||||||| |||||| | | |||| ||||| Sbjct 999173 TATAATGTTACTTTTGACTTATTTGAAAAAATTAATGTTAATGGAGATAATGCACATCCA 999114 Query 47127 TTGTGGAAATGGTTACAGACAC 47148 || ||||||||||| |||||| Sbjct 999113 TTATGGAAATGGTTGAAGACAC 999092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603150339369600