Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq108 136 2e-27 seq31 123 2e-23 >seq108 Length=811940 Score = 136 bits (150), Expect = 2e-27 Identities = 176/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | |||||| || ||||| || || ||| |||||||| |||||||| || Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 251253 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| ||||||||||| ||||| || || | || || || || || Sbjct 251254 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 251313 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| ||| | ||||| | ||| || ||| | ||| || Sbjct 251314 ATTCCTTCCTTGTCT-TGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTAC 251372 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT-TGTA 34716 |||| ||||| |||||||| || || ||||| ||||| ||||||||| | || |||| Sbjct 251373 CTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGATTATCTGTA 251431 >seq31 Length=1439309 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | |||||| | || || || || || |||||||||||||||||| Sbjct 964094 CCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAA 964153 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| ||||||||||| ||||| |||||||| ||||| || || || Sbjct 964154 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 964213 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || || ||| ||| || | |||||| | ||||||||| ||| || | Sbjct 964214 ATTCCTTCTTTATCT-TGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCT-TCAA 964271 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || ||||| || | ||||| ||||| || ||||| Sbjct 964272 CTTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGCAT 964320 Score = 122 bits (134), Expect = 5e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| || |||||||| ||||||||||| ||||||| | ||||||||||| Sbjct 964779 ATGAAGAGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTG 964838 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| || ||||| || ||||| ||||| || || || | |||||| || ||| ||||| Sbjct 964839 TTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTT 964898 Query 34623 TTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 |||| ||||||||| ||| || ||||| | ||| || ||||| || | Sbjct 964899 AGCCTTTACATTCTCTATTGTGTCTGAAGCT-TCAACTTCTAAGGTGATAGTTTTTCCTG 964957 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 |||| || || ||||| |||||||| || || Sbjct 964958 TTAAAGTCTTAACAAAGATCTGCATTTTTAT 964988 Score = 118 bits (130), Expect = 7e-22 Identities = 171/238 (72%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| |||||||| ||||| || || ||||| ||||||||||| Sbjct 961508 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961567 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | |||||||||||||| || ||||| || || || || || || || || Sbjct 961568 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 961627 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | ||| || || ||| ||||| |||| ||||| ||| ||| || || Sbjct 961628 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCT-TCAAC 961686 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTA 34716 ||| | || || ||||| || |||| ||||| ||||||||||||| |||||||| Sbjct 961687 TTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCA---TGATTGTA 961741 Score = 114 bits (126), Expect = 8e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| |||||||| ||||| || || ||||| ||||||||||| Sbjct 961280 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961339 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| ||||||||||| ||||| || ||||| |||||||| || || Sbjct 961340 AGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 961399 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| || |||||| ||||| Sbjct 961400 ATTCCTTCTTTGTCTTGAATCTT 961422 Score = 114 bits (126), Expect = 8e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | |||||| |||||||| || |||||||| || ||||||||||| Sbjct 964322 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 964381 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| || |||||||| ||||| || ||||| |||||||| || || Sbjct 964382 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 964441 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| || |||||| ||||| Sbjct 964442 ATTCCTTCTTTGTCTTGAATCTT 964464 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| |||||||| ||||| || || ||||| ||||||||||| Sbjct 960987 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961046 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | |||||||||||||| || ||||| || || ||||| || || || || Sbjct 961047 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 961106 Query 34600 ACTCCCTCCTTGTCT 34614 | ||| || || ||| Sbjct 961107 ATTCCTTCTTTATCT 961121 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || || |||| ||| | ||| ||||| || || || || ||||| || || |||||| Sbjct 960528 TCTCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCT 960587 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 | ||||||| | |||||||||||||| || ||||| || || || || || || || Sbjct 960588 AAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGA 960647 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCT 34654 || | ||| || || ||| ||| || | ||| ||| | ||||| | | ||| | Sbjct 960648 GGAATTCCTTCTTTATCT-TGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCT-T 960705 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | || || || || || || | ||||| ||||| || ||||| Sbjct 960706 CAACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714103501320