Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq108 154 1e-32 seq2544 131 1e-25 seq31 123 2e-23 seq87 116 3e-21 seq1683 114 1e-20 seq65 102 7e-17 seq348 89.7 4e-13 seq523 86.0 5e-12 >seq108 Length=811940 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || ||| |||||||||||||||| ||| | ||| Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||||||||||||||| || || || || ||| Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 250845 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||||||||||| | || ||||||||||||| Sbjct 250844 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAAT 250785 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | ||| | ||| | || | || ||||| || Sbjct 250784 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACGACTTCGTGGTGGTAT 250735 Score = 152 bits (168), Expect = 4e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || |||||||||||||||| ||| | ||| Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||||||||||||||||||| || || || |||||| Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 249106 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||||||||||| | || |||| ||||| || Sbjct 249105 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCTGATTATAAT 249046 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||| || ||||| Sbjct 249045 ATTCAAAAAGAATCGAC 249029 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || |||||||||||||||| ||| | | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||||||||||||| || || || || ||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| |||||||| || || |||||||||| || Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | ||| | |||||||| | || ||||| || Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGGTAT 249224 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || || |||||||| | ||||| ||| | ||| Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||| || |||||||| || || ||||||||| Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAA 250617 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || ||||| ||||||| || || |||| ||||| || Sbjct 250616 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAAT 250557 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || ||||||| || ||||||||| | ||||| || Sbjct 250556 ATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGAAT 250507 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || |||||||| | ||||| ||| | || Sbjct 251192 ATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCA 251133 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||| || |||||||| || || ||||||||| Sbjct 251132 GATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAA 251073 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||||||||||| || || |||| ||||| || Sbjct 251072 CAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTTCTGATTATAAT 251013 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | |||||||| | || ||||| || Sbjct 251012 ATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGGTAT 250963 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| |||| || || | || ||||| || || || | || Sbjct 251421 CATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTAGAGGCCTC 251362 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| |||||||||||||| ||||| || ||||| ||||| Sbjct 251361 AGATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCA 251302 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | || || | || || |||||| | ||||| | || | || ||||| || Sbjct 251301 GCAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTATAA 251242 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || ||||||| || ||||||||| | ||||| || Sbjct 251241 TATTCAAAAAGAGTCAACACTACATTTAGTATTGCGTTTGAGAGGTGGAAT 251191 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||| | || ||| ||||||||||||||||||||| || || || || |||||| | Sbjct 249615 ATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAACAGAGA 249556 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | || || ||||| |||||||| || || ||||||||||||| |||||| Sbjct 249555 CTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAA 249496 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || | ||| | |||||||| | || ||||| || Sbjct 249495 AAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGGTAT 249452 >seq2544 Length=277 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||||||||||||||| || || || | |||||| | ||||| ||| | || Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||| || ||||| || || || |||||| Sbjct 116 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCAA 175 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || |||||||| | || ||||||||||||| Sbjct 176 CAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAT 235 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 |||||||| || || || | ||| | |||||||| Sbjct 236 ATTCAAAAAGAATCTACACTTCATCTTGTTTTGCG 270 >seq31 Length=1439309 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || ||| ||||||| ||||| || ||| | || Sbjct 961506 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTCG 961447 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || ||||||||||||||||| || || || || ||| Sbjct 961446 GATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCAA 961387 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||| | ||||| | || | || ||||| || Sbjct 961386 CAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAAT 961327 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||| || || || || | |||||||| ||| Sbjct 961326 ATTCAGAAAGAATCTACTCTTCATTTGGTATTG 961294 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || || | || ||||||||||| ||| | || Sbjct 961735 CATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 961676 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| || || || |||||||| |||||||| || || || ||||| Sbjct 961675 AGATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 961616 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | || || |||||| | ||||| | || | || ||||| || Sbjct 961615 GCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTATAA 961556 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||| || || || || | |||||||| ||| Sbjct 961555 TATTCAGAAAGAATCTACTCTTCATTTGGTATTG 961522 Score = 104 bits (114), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 26999 TGTAAAAACTCTG--ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||||||| || | || || ||| ||||||| |||||||| ||| | || || |||| Sbjct 961204 TGTAAAAGCTAAGNCACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGATACGATA 961145 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 |||| || || ||||||||||| |||||||| || || || ||||| ||||| || Sbjct 961144 GAGAACGTAAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAGCGATTG 961085 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || |||||| | ||||| | || | || ||||| || ||||| || Sbjct 961084 ATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTATAATATTCAGAAA 961025 Query 27177 GAGTCGACCTTACATTTGGTTTTG 27200 || || || | |||||||| ||| Sbjct 961024 GAATCTACTCTTCATTTGGTATTG 961001 >seq87 Length=1479609 Score = 116 bits (128), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 26946 TGATTTGTTAATAAGAGCAATAAATTT--TTTAATT---TATACGCC-ATGCAGATATTT 26999 |||||| ||| |||| | | | ||| ||||| | ||||| | |||||||||||| Sbjct 253337 TGATTTTTTATTAAGTGTACGATCTTTCTTTTAAATAGGTATACCACGATGCAGATATTT 253278 Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || |||||| |||| || || |||| ||||||||||| ||| | || || | || || Sbjct 253277 GTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCAGATACTATAGAA 253218 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || ||| |||||||| || |||||||| |||||||| ||||| || ||| | || Sbjct 253217 AATGTGAAAGCTAAAATTCAGGATAAAGAAGGAATACCACCTGATCAGCAACGTCTTATT 253158 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAA 27175 | || || || ||||| ||||| | || | || || || || |||||||| Sbjct 253157 TTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTATCGGACTATAATATTCAAAA 253102 >seq1683 Length=220 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 ||| || || || || ||||| || || || |||||||||||||||| ||| | || || Sbjct 1 GCAAATTTTCGTCAAGACTCTTACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGA 60 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | ||||| | || || |||||||||||||||||||| || || || || ||||| Sbjct 61 TACTATTGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCCCCTGACCAACA 120 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 | || || | || || ||||| ||||||| || || |||| ||||| || || Sbjct 121 AAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCTGATTATAATAT 180 Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||| || || || | ||| | |||||||| Sbjct 181 CCAAAAAGAATCTACACTTCATCTTGTTTTGCG 213 >seq65 Length=484858 Score = 102 bits (112), Expect = 7e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| || ||||| || ||||| |||||||||||||||| ||| | | Sbjct 16785 CCATGCAGATATTTGTGAAGACTCTAACTGGCAAAACTATTACTCTTGAAGTCGAAGCAT 16844 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 | || | ||||| | || ||| |||||||||||| |||||||| Sbjct 16845 CAGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGG 16890 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| | |||||| | ||||| | || || |||||||||||||| || Sbjct 16952 AGGAATTCCACCTGGTCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAG 17011 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| |||| ||||| || ||||| ||||| || || ||||||||||| | ||||| | Sbjct 17012 GACACTTTCAGATTATAATATTCAGAAGGAATCTACATTACATTTGGTACTACGTTTAAG 17071 Query 27209 GGGTGG 27214 |||||| Sbjct 17072 GGGTGG 17077 >seq348 Length=983679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 ||||||||||||||||||| || ||||| || ||||| || ||| || | | | | Sbjct 639567 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 639508 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAA 135756 |||| || ||| | |||||||| ||||| ||||||| | |||||||||| Sbjct 639507 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAA 639459 >seq523 Length=1410029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 49818 ATACGCACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGC 49877 ||| | ||| |||||||| || |||||||| | ||||| || || |||| ||| || || Sbjct 469547 ATATGAACCGGGTAAAAGGCACTGGTTGAAGGTAAAAAAGGATTATTTGTACGACGGTGC 469606 Query 49878 CATGGCCGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTC-TGGAAAAAAGG 49936 ||||||||||| | ||| | || || | || |||||||||||| | |||| ||||| Sbjct 469607 AATGGCCGATAGTGCAGATCTCGTTGTGCTTGGCGCATGGTACGGTACGGGGAACAAAGG 469666 Query 49937 GTGGCTTCTTG-TCTA 49951 | | | |||| |||| Sbjct 469667 TTTGTTACTTGATCTA 469682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434896436620800