Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq31 98.7 7e-16 seq108 95.1 9e-15 >seq31 Length=1439309 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||||||||| || ||||||| |||| || ||| || Sbjct 960758 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAA-GCTT 960700 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || ||| ||||| | || ||| || || || |||||||| |||| Sbjct 960699 CG--GAT--ACAATAGAGAACGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCT 960644 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || |||||||| ||||||||| | || || | | | | | | ||| Sbjct 960643 GATCAGCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGAT 960584 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||| ||||||||||| || |||| ||||| ||| Sbjct 960583 TACAATATCCAAAAAGAATCTACACTGCACTTGGTATTG 960545 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| ||||| || ||||||| |||| || ||| || Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAA-GCTT 961449 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || ||||| | || || || || || ||||||||||| |||| || Sbjct 961448 CGGATACGATAGAGAAC--GTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGA 961391 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||||| || |||||||| || |||||| | || || | | | | | || ||||| Sbjct 961390 CCAACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTA 961331 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || || || ||||| ||| | |||||||| ||| Sbjct 961330 TAATATTCAGAAAGAATCTACTCTTCATTTGGTATTG 961294 >seq108 Length=811940 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| || || ||| |||||| |||| || ||| || Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| |||||| |||||||||||| |||| || | Sbjct 249165 GACACAATTGAAAAT--GTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATC 249108 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || || ||||| |||||||||||||| || | ||| | | || ||||| | Sbjct 249107 AACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCTGATTATA 249048 Query 27968 ACATCCAAAAAGA 27980 | || |||||||| Sbjct 249047 ATATTCAAAAAGA 249035 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| |||||||| ||| |||||| | || || ||| | Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| || ||||||||| |||| || Sbjct 251133 AGATACCATTGAAAAT--GTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGAT 251076 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | || |||||||| |||||||||||||| || | || | | || ||||| Sbjct 251075 CAACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTTCTGATTAT 251016 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| || | ||| | |||||||| | ||||| || Sbjct 251015 AATATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 250966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||||||||| || || |||||| |||| || ||| || Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| || || |||||||||||| |||| || | Sbjct 250904 GATACCATTGAAAAT--GTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACC 250847 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || || ||||| |||||||||||||| || | || | | |||||||||| Sbjct 250846 AACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACA 250787 Query 27968 ACATCCAAAAAGA 27980 | || |||||||| Sbjct 250786 ATATTCAAAAAGA 250774 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| || || ||| |||||| |||| || ||| Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| |||||| |||||||||||| ||||| || | Sbjct 249393 GATGCCATTGAAAAT--GTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACC 249336 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | | || ||||| || ||||| ||||| || | || | | |||||||| | Sbjct 249335 AACAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATA 249276 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| || | ||| | |||||||| | ||||| || Sbjct 249275 ATATCCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 249227 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 ||||||||||| || || |||||||| || ||| |||||| | || || | ||||| | Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTG-AAGCATC 250678 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | ||| | | | || |||| | || || ||||||||| |||| || Sbjct 250677 CGATACTATTGAAAAT-GTTAAGACTAAAATTCAG--GATAAAGAAGGTATTCCTCCCGA 250621 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || || | || |||||||| || ||||| |||| || | || | | || ||||| Sbjct 250620 TCAACAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTA 250561 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| || | ||||| || ||||||||| | || || Sbjct 250560 TAATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGG 250510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355844878225080