Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq108 167 5e-36 seq31 158 3e-33 seq1683 150 4e-31 >seq108 Length=811940 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| || |||||||| || |||||||| | ||| || | ||||||| Sbjct 249014 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCT 249073 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || ||||| | | ||||| |||||||||| ||||| ||||| Sbjct 249074 TCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT 249133 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||| || ||||| || ||||| || |||||| || ||||| || || Sbjct 249134 TGAATTTTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTT 249193 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||||||||| ||||| | ||||| Sbjct 249194 TTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249225 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| ||||| || || ||||||||||| |||||||| | ||| || Sbjct 249232 ACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAAAGAGT 249291 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||| || || || ||||| || | ||||||||||| |||| || Sbjct 249292 ACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACC 249351 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || || ||| ||| || ||||| |||| ||| | |||||| || || Sbjct 249352 TTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACTTCAAG 249411 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || |||||||||||||| ||||| | ||||| Sbjct 249412 AGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249453 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| ||| || || || || || || |||||||| || || ||||| | ||| || Sbjct 250743 ACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGT 250802 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || || ||||| | | |||||||||||||||| || Sbjct 250803 ACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACC 250862 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || ||||| ||| || ||||| ||||| || || |||||| || || Sbjct 250863 TTCTTTGTCTTGAATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCAAG 250922 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||||||||| ||||| || || || | ||||| Sbjct 250923 AGTAATAGTCTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 250964 Score = 122 bits (134), Expect = 2e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || |||||||| || |||||||||| ||| || | |||||||||||||| Sbjct 250534 TGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGT 250593 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | ||||| || ||||||| ||||| || ||||| || ||| Sbjct 250594 TTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATCCTGAAT-TTT 250652 Query 211032 TGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||| || || || || |||||| || | ||| || || ||||| || Sbjct 250653 AGTCTTAACATTTTCAATAGTATCGGATGCTTCAACTTCTAAAGTAATAGTTTTTCCTGT 250712 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | ||||| Sbjct 250713 AAGAGTCTTAACGAAAATTTGCAT 250736 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||||||||| || |||||||| | | || | ||||||||| || || Sbjct 251218 TGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGT 251277 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | ||| || || || |||| |||||||||||| || || || Sbjct 251278 TTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTC 251337 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| ||||| || ||| || ||||| ||||| || || || || || Sbjct 251338 GCTTTTACATTTTCAATGGTATCTGAGGCCTCTACCTCCAGAGTTATTGTTTTACCTGTC 251397 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| | |||||| Sbjct 251398 AATGTTTTGACAAAGATCTGCAT 251420 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| ||||| || || |||||||| || || ||||| | ||| || Sbjct 249460 ACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGT 249519 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||| || || || ||||| || | ||||||||||| |||| || Sbjct 249520 ACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACC 249579 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||| ||||| || || ||| ||| || ||||| ||| Sbjct 249580 TTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATG 249616 >seq31 Length=1439309 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | || || |||||||| || ||||| || || |||||||| | || || Sbjct 960765 CGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAGAGAGTGTT 960824 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| ||||| ||||| || || || | |||||||| |||||||||| |||| Sbjct 960825 CTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGAGGAATTCCT 960884 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| || ||||| || || || || || |||||| || || Sbjct 960885 TCTTTATCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACTTCAAGT 960944 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| |||||||| || ||||| | |||||| Sbjct 960945 GTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 960986 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || |||||||| || || ||||| || ||||||||||| | ||| || Sbjct 964100 CGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAAAGAGTT 964159 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || ||||| | |||||||| || ||||||| |||| Sbjct 964160 CTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCT 964219 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| ||| || || || || ||||| || |||||| || | Sbjct 964220 TCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAG 964279 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || |||||||| || ||||| | ||||| Sbjct 964280 GTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGCAT 964320 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | |||||||| || ||||| || || |||||||| | || || Sbjct 961286 CGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGTT 961345 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || || || | |||||||||||||| |||| |||| Sbjct 961346 CTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGAATTCCT 961405 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || ||||| || ||||| || || || || || |||||| || || Sbjct 961406 TCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACGTCAAGT 961465 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| |||||||| || ||||| | |||||| Sbjct 961466 GTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 961507 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | |||||||| || ||||| || || |||||||| | || || Sbjct 961514 CGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGTT 961573 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || ||||| | ||||| || |||||||||| |||| Sbjct 961574 CTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCCT 961633 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| || || || || || || || || |||||| || ||| Sbjct 961634 TCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAACTTCAAGA 961693 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || || ||||| | |||||| Sbjct 961694 GTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 961734 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | ||| || || || ||||||||||| || ||||| || || Sbjct 960537 CGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAGAGTGTT 960596 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || || || | ||||| || |||||||||| |||| Sbjct 960597 CTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCT 960656 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| ||| ||||| || || || || || |||||| || || Sbjct 960657 TCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAACTTCAAGT 960716 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| || ||||| || ||||| | |||||| Sbjct 960717 GTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 960758 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | |||||||| || ||||| || || |||||||| | || || Sbjct 960993 CGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGTT 961052 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || || || | || || || |||||||||| |||| Sbjct 961053 CTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGAATTCCT 961112 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || || || || ||||| || || || || || |||||| || || Sbjct 961113 TCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACTTCAAGT 961172 Query 211074 GTGATCGTCTTTCCCGTG 211091 || || |||||||| ||| Sbjct 961173 GTAATAGTCTTTCCAGTG 961190 Score = 104 bits (114), Expect = 5e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | || || || || || |||||||| |||||||| | || || || Sbjct 964330 AAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGTTCT 964389 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| ||||| || || || || || | |||||||||||||| |||| |||||| Sbjct 964390 TCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGAATTCCTTC 964449 Query 211016 CTTGTCCTGGATCTT 211030 ||||| || ||||| Sbjct 964450 TTTGTCTTGAATCTT 964464 >seq1683 Length=220 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| ||||| || || ||||||||||| |||||||| | ||| || Sbjct 220 ACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAGAAAGAGT 161 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||||| || || || || || | | |||||||||||| |||| || Sbjct 160 ACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACC 101 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || || || || || ||||| || || ||||| |||||| || || Sbjct 100 TTCTTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCAAG 41 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| || || ||||| || |||||||| || || Sbjct 40 AGTAATAGTTTTTCCTGTAAGAGTCTTGACGAA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159091999394600