Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq108 95.1 1e-14 seq31 91.5 1e-13 >seq108 Length=811940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || || || || |||||||| || ||||||| Sbjct 250495 ACAAAAATTTG--CATTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTT 250552 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | |||||| || | || || |||||||| || ||||| || | | Sbjct 250553 GAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATC 250612 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACC 39219 ||| || |||| || | | ||||| ||| ||| ||| || || | | | | Sbjct 250613 TCTGTTGATCGGGAGGAATACCTTCTTTATCC-TGAATTTTAGTCTTAACATTTTCAATA 250671 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 |||||| | || || || | || ||| ||||||| || || || ||||| || ||| Sbjct 250672 GTATCGGATGCTTCAACTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATT 250731 Query 39280 TGCAT 39284 ||||| Sbjct 250732 TGCAT 250736 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || || || || |||||||| || |||||||| Sbjct 251179 ACAAAAATTTG--CATTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTT 251236 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | | ||| ||| | || || || ||||| || ||||| || | | Sbjct 251237 GAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATC 251296 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||| || | || | | || ||||| |||||| ||| | | | | | Sbjct 251297 TTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGG 251356 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | ||| || |||| || || |||| || |||| ||||| |||||||| | Sbjct 251357 TATCTGAGGCCTCTACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCT 251416 Query 39281 GCAT 39284 |||| Sbjct 251417 GCAT 251420 >seq31 Length=1439309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||||| | | || |||||||| || || ||||| | Sbjct 961265 ACAAAAATTTG--CATTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCT 961322 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | ||||||| | | || || || ||||| || ||||| || | || Sbjct 961323 GAATATTATAATCTGAGAGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAAC 961382 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | || ||||| | ||| | | |||||||| || || || | || | | || Sbjct 961383 GTTGTTGGTCAGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCG 961442 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | || ||||| | || ||| | ||||| || || ||||| |||||||||| Sbjct 961443 TATCCGAAGCTTCAACGTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTT 961502 Query 39281 GCAT 39284 |||| Sbjct 961503 GCAT 961506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429524450248520