Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq108 152 3e-32 seq1683 122 6e-23 seq31 122 6e-23 seq623 95.1 8e-15 seq628 82.4 5e-11 >seq108 Length=811940 Score = 152 bits (168), Expect = 3e-32 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || || || |||||||| || ||| | |||||||| | | Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| |||| || |||||| || ||||||||| | || || ||||| Sbjct 250676 GATACTATTGAAAATGTTAAGAC-TAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCA 250618 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||| | || || ||||| || ||||| |||||||| | || |||||| | ||||| Sbjct 250617 ACAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCG--GATTAT 250560 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || |||||||| || ||| |||||||||| || | ||| |||| ||| Sbjct 250559 AATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 250509 Score = 138 bits (152), Expect = 8e-28 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || |||||||| ||||| || ||||| |||||||| | | Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| ||||||| |||||||||||| | || || |||||| Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 249106 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 ||| | || || ||||| || |||||| ||||||| | ||| |||||| ||||| | Sbjct 249105 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTT--CTGATTATA 249048 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || |||||||| || || Sbjct 249047 ATATTCAAAAAGAATCGAC 249029 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| || ||||| || || || || | Sbjct 251420 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTAGAGGCCTCA 251361 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| |||||| ||||| ||||| | || |||||||| Sbjct 251360 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 251301 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || |||||||| ||||| | ||| || ||| ||||| || Sbjct 251300 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTATAAT 251241 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||||||| ||| |||||||||| || | ||| |||| ||| Sbjct 251240 ATTCAAAAAGAGTCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 251193 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || |||||||| || || ||||| |||||||| | | Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| |||||||||||| | || || || ||| Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 250845 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || |||||| ||||||| | || ||| | ||||||||| Sbjct 250844 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAAT 250785 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| || || | ||| | ||| || Sbjct 250784 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTA 250752 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || |||||||| ||||| || ||||| |||||||| | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||||| ||||| ||||||| |||||||||||| | ||||| || ||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| ||||||| | || ||| | |||||| || Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| || ||| | ||| | ||||| Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGTTTT 249242 Score = 95.1 bits (104), Expect = 8e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 23678 TTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737 |||||| ||||| ||||||| |||||||||||| | ||||| || |||||| | Sbjct 249614 TTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAACAGAGAC 249555 Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797 | || ||||| || ||||| ||||||| | || ||| | ||||||||| || |||| Sbjct 249554 TGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAA 249495 Query 23798 AAGAGTCCACATTACATTTAGTTTT 23822 |||| || ||| | ||| | ||||| Sbjct 249494 AAGAATCTACACTTCATCTTGTTTT 249470 >seq1683 Length=220 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| |||||||| || || || || |||||||| || ||||| |||||||| | | || Sbjct 1 GCAAATTTTCGTCAAGACTCTTACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGA 60 Query 23673 CACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| |||||| | |||| | |||| || |||||||||||| | || || || |||| Sbjct 61 TACTATTGAAAATGTTAAGGCTAAAA-TTCAAGACAAAGAAGGTATTCCCCCTGACCAAC 119 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | | || || ||||| || ||||| |||||||| | || ||| | ||||| || | Sbjct 120 AAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCTGATTATAATA 179 Query 23792 TACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | |||||||| || ||| | ||| | ||||| Sbjct 180 TCCAAAAAGAATCTACACTTCATCTTGTTTT 210 >seq31 Length=1439309 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| || || || || || | |||||||| | | Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | || | || || |||||||| | || |||||||| Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGA-TTCAAGATAAAGAAGGAATTCCTCCAGATCA 964202 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| ||||| || |||||||| ||||| | | | ||| | ||||| || Sbjct 964201 ACAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 964142 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| || ||| | || |||| || || | ||||||||| Sbjct 964141 CATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGGA 964093 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||||||||| || |||||||| |||||||| |||||||| | | Sbjct 961734 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 961675 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| || ||| || |||||||| | || || ||||| Sbjct 961674 GATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 961615 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| || |||||||| ||||| | | | || | ||||| || Sbjct 961614 CAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTATAAT 961555 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || || | ||||| || || || | ||||||||| Sbjct 961554 ATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGA 961507 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| ||||| ||||| || || || || || ||||| | | Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | || | |||| || ||| ||||||||||| | || || || || Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 961388 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||||| ||||| | | | || | ||||| || Sbjct 961387 ACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAA 961328 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || || | ||||| || || || | ||||||||| Sbjct 961327 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGA 961279 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || ||||| || | || |||||||| ||||| | |||||||| | Sbjct 964985 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAGCT 964926 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || ||| || ||||| || | || |||||| Sbjct 964925 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGAT 964866 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || ||||| || |||||||| ||||| | | || | ||||| Sbjct 964865 CAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 964806 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || |||||||| || || Sbjct 964805 AATATTCAAAAAGAATCTAC 964786 >seq623 Length=301109 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 32826 ACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCGTGC 32885 |||||||||| ||||||||||| | || || | ||| || | |||||| || || Sbjct 26089 ACATAATCTTGTCCTTTAATCATTAATAAATAGTAACATTTAGAAAACCATTTCGCATGT 26030 Query 32886 ATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACAC 32945 | |||||| | || | | |||||||||||| ||||| | | || ||| |||| Sbjct 26029 TGCTCCCAAGGATTATCTTGTGGTTCCCAATCTTTTAAACCACATCCACAATAATAACAT 25970 Query 32946 ACAACTTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTTC 33005 | | || || ||| |||| ||||| ||||||| || |||||||||||| | | Sbjct 25969 ATAGTTTGATCACCTTTTCCTATATAATAAAAACCTGCATCTGCTAATTGTTCTTTTGTT 25910 Query 33006 TGTTGCAAAGATTTTGGCCA 33025 ||| ||| | |||||||||| Sbjct 25909 TGTAGCATAAATTTTGGCCA 25890 >seq628 Length=409123 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 32826 ACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCGTGC 32885 |||||||||| |||||||| | || || | || || | |||||| || || Sbjct 268554 ACATAATCTTGTCCTTTAACTGTTAATAAATAATAGCACTTAGAAAACCACTTTGCATGT 268495 Query 32886 ATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACAC 32945 | |||||| | || || | |||||||||||| ||||| | | || | | |||| Sbjct 268494 TGTTCCCAAGGATTATCTTCTGGTTCCCAATCTTTTAAACCACATCCACAATGATAACAT 268435 Query 32946 ACAACTTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTTC 33005 | | || || ||| |||| ||||| ||||||| || |||||||||||| | | Sbjct 268434 ATAGTTTGATCACCTTTTCCCGTATAATAAAAACCTGCATCTGCTAATTGTTCTTTTGTT 268375 Query 33006 TGTTGCAAAGATTTTGGCCA 33025 ||| ||| |||||||||||| Sbjct 268374 TGTGGCATAGATTTTGGCCA 268355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337992957252320