Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq108 91.5 1e-13 >seq108 Length=811940 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 |||||||||||||||||||||||||||| | ||| | ||||||||||||||| || Sbjct 250768 GTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCA 250827 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || |||||||| || | ||||||||||| ||| || ||| Sbjct 250828 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTT 250887 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTT---GTTTCGACGGTAATAGTTTTGCCCGTCAAT 101218 |||| | | || || ||| | | ||| | |||||||| || ||||| | Sbjct 250888 ACATTTTCAATGGTATC---GGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGA 250944 Query 101219 GTTTTAATAAAAATTTGCAT 101238 ||||| | ||||||||||| Sbjct 250945 GTTTTGACGAAAATTTGCAT 250964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATTGTTTGC 101099 || ||||||||||||||||| ||||| | | ||| | || ||||||||||||||| | Sbjct 250996 GTAGATTCTTTTTGAATATTATAATCAG--AAAGTGTACGACCATCTTCCAATTGTTTTC 251053 Query 101100 CCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTT 101159 | ||| | || | || ||||| || || | |||||||| || |||||| || Sbjct 251054 CAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATCCTGAATTTTAGCTT 251113 Query 101160 TCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATG 101219 | |||| | | || |||| | ||| | ||||||||||| || || | || Sbjct 251114 TAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTAAGTG 251173 Query 101220 TTTTAATAAAAATTTGCATT 101239 |||| | ||||||||||||| Sbjct 251174 TTTTGACAAAAATTTGCATT 251193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||||||||||||||||||||||| | ||| ||||||||| ||||| || Sbjct 249485 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAACTGTTTACCA 249544 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || || || |||||||| || | ||||||||||| ||||||| ||| Sbjct 249545 GCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 249604 Query 101162 ACAT 101165 |||| Sbjct 249605 ACAT 249608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409640629326360