Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq50 109 5e-19 >seq50 Length=3512070 Score = 109 bits (120), Expect = 5e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 ||||||||| ||||| | |||||| || |||| ||||| || || || || | || || Sbjct 996469 ATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTC 996528 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 ||||| ||| ||||| | || ||||| ||| || | || || || || || || ||| Sbjct 996529 TGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGA 996588 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 ||||||||||| || || |||||||||||||| Sbjct 996589 AGCTGCAAAAAATGCTAAGACATGAGATATAAA 996621 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 4369 CTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTC 4428 ||||||| |||| || || |||||||| ||||| || | ||| |||| ||||| || | Sbjct 995812 CTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGC 995871 Query 4429 CAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTG 4488 | || | | ||||||| || | ||||||||| |||||||| || | || || || Sbjct 995872 CTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCAATTTTGACAGCATCCT 995931 Query 4489 TGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAAC 4548 | || || | | | | || ||||||||| | ||| | || | |||| ||||| Sbjct 995932 TAATAATTGATGTGACTCGTTCAGAAGATGGTTTTTGTACAATGTGTTTGAACATTAAAC 995991 Query 4549 ACGCAAAATCACAATGCAAACC 4570 | |||||||||||||| || || Sbjct 995992 ATGCAAAATCACAATGTAATCC 996013 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||||| | ||| |||||||| || |||||||| || ||||| |||||||| ||||| Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 |||||||||||| | ||||| |||| | |||||||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCT 996834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427028573145320