Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq43 188 1e-42 seq50 158 2e-33 seq523 91.5 2e-13 >seq43 Length=2749190 Score = 188 bits (208), Expect = 1e-42 Identities = 227/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089 ||| || || ||| || || ||||||| ||| || ||||| |||||||| | | || Sbjct 1504427 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCT 1504486 Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149 || |||||| ||| | | ||||||||| || | |||||| ||||| |||| ||||| Sbjct 1504487 TTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCT 1504546 Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209 | || || ||||| ||||| |||||||| | ||||||||| ||||| |||||||| || Sbjct 1504547 TCTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 1504606 Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269 ||| || || |||||||||||||| | || ||| |||||| | |||||| | || Sbjct 1504607 AGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 1504666 Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329 ||| | ||| | | |||||||||| | || | || | | ||| ||| | |||||| Sbjct 1504667 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAGCATTCCACATATCGTA 1504726 Query 77330 TTGTAGAAT 77338 ||||| ||| Sbjct 1504727 TTGTAAAAT 1504735 Score = 161 bits (178), Expect = 1e-34 Identities = 252/358 (70%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||||||||| ||| || |||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || |||||||| | |||||| | | ||| | ||| || | | ||||| ||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 1505196 Query 77644 AATCAAATCTTCCATCTATA------ACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||||||| || || ||| |||||||| || | ||| || || |||| ||||| Sbjct 1505197 AATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 1505256 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || |||| | ||| ||| || | | || ||||||| |||||||| || Sbjct 1505257 AGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTTT 1505316 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816 | || || || | |||||| || || || ||| | |||| || |||||||| ||| Sbjct 1505317 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGA-TCTTTATAAAGCATA 1505375 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 | ||||| || ||||||| || || | ||||| | |||| | ||||||||| Sbjct 1505376 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 1505433 Score = 150 bits (166), Expect = 2e-31 Identities = 225/316 (71%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || || ||||| ||||||||||| | ||| || | |||||| | |||||||||||||| | Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 ||||| || | ||||||||| |||||| ||||| ||||| | ||||| || || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || || ||||| | ||||||||| | ||| |||||| ||| ||| |||| || Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1506635 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGA 78304 | || ||||| |||||| |||| | || || || || || || || Sbjct 1506636 GTACCTCTTGCTCGAATA----CAATGTACATTAAGTCCAATACCACCAGCTGATTTGCT 1506691 Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGT 78363 || || || || | ||| ||||| || || || || || ||||| || || ||| ||| Sbjct 1506692 AATGAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGT 1506751 Query 78364 TAAGAAGAAAACAGCT 78379 ||| || ||||||||| Sbjct 1506752 TAATAA-AAAACAGCT 1506766 Score = 138 bits (152), Expect = 2e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || ||||||||||| |||||||||||| |||| ||||| |||||| ||| Sbjct 1505713 GTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTGGA 1505772 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || | ||| | ||| ||| ||||||||||||||| ||||||||||||||| Sbjct 1505773 CACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 1505832 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 |||||| |||| |||| | ||||| |||||| || ||||| Sbjct 1505833 AGAGCATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 Score = 120 bits (132), Expect = 4e-22 Identities = 192/275 (70%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||||||| || || ||| | |||| ||| | ||| ||||||||||| ||||| Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| || | | ||| || ||||| |||||| | || || ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || || || | ||| ||||||||||| ||||||||||| || || |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 || || || | |||| | ||||| ||||||||||| || || ||| ||||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 78618 TAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 ||||| || ||||||||| ||| |||| |||| Sbjct 1507070 TAAATTATTGCAGAATTTAACTTA--TTTGCATTT 1507102 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||| |||||||| | |||| | |||||| ||||||||||| ||||| || || || || Sbjct 1504847 ATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCACCATA 1504906 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||| | |||||| || || | |||| || | ||||||||| ||| ||||| ||||| Sbjct 1504907 ATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATA 1504966 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 | | | || ||| |||||||| | || |||| ||||||||| Sbjct 1504967 GCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 >seq50 Length=3512070 Score = 158 bits (174), Expect = 2e-33 Identities = 169/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 48396 TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 |||| |||| || ||| ||||| ||||| | | ||||||||| || |||| |||||| Sbjct 996435 TTGC-ATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCC 996493 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAAT 48515 || || | ||||| || || ||||| | || ||||| || ||||| || || |||| Sbjct 996494 ATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAAT 996553 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 |||||| | | ||||||||| || ||||||||| ||| |||||||||||||| ||||| Sbjct 996554 CGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGA 996613 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 ||||||| |||||| ||| ||| | |||||||| ||| Sbjct 996614 GATATAAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996 ||| ||| |||||| | ||||||||| || | |||||||||||| ||||| |||||| Sbjct 995787 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 995846 Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056 ||| | || ||| ||||| ||||| | || ||| |||| || || || | ||| Sbjct 995847 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 995906 Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA 48116 |||||||| || ||||||||||| || || ||||| || ||| | |||| Sbjct 995907 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTT 995966 Query 48117 TACAACAAATGTTTAAACATTAAACATGCAAAATCACAATG 48157 | | | ||||| |||||||||||||||||||||||||| Sbjct 995967 TGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 996007 Score = 102 bits (112), Expect = 1e-16 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| || | ||| |||||||| |||||||||| ||||| || |||||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT-TTGCAAGG 48743 ||| |||||| |||| || || |||| |||||||||| |||||||| || ||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAATA 996854 Query 48744 ATAGGTTC 48751 || ||||| Sbjct 996855 AT-GGTTC 996861 >seq523 Length=1410029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 170993 GCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGAATGTTTGCA 171052 |||||| | || | || || | | ||| | || |||| |||| ||||||| | || Sbjct 468637 GCAGAAGCTTGCAAGTCCGTGGAAATGGCGATGAAGAAATGTCCAAATGGAATGCTGGCC 468696 Query 171053 GAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAATTTTGCCTTC 171112 ||||| ||||||||||| |||||||| ||||| ||||| || || | ||| | | Sbjct 468697 GAAGTGAAATATGATGGAGAACGAGTTCAAGTGCATAAGAAAGGGAACGAATTTCGATAC 468756 Query 171113 TTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGT 171150 ||||||||| | |||||||||| | || |||||||| Sbjct 468757 TTTAGCAGATCCTTGAAACCAGTGCTTCCTCATAAAGT 468794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694633719225600