Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq43 196 7e-45 seq50 161 1e-34 >seq43 Length=2749190 Score = 196 bits (216), Expect = 7e-45 Identities = 216/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 75646 TATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAG 75705 ||||||| ||| || || || |||||||| | | ||| || |||||| ||| | | Sbjct 1504448 TATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCTTTCAGTTAAATCTCGTAATAA 1504507 Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| |||| |||||| ||||| |||| ||||||| || || ||||| ||||| Sbjct 1504508 ATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTTCTTGTATAGATATTGCTGGT 1504567 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 |||||||| | ||||||||| ||||| |||||||| |||||||| || || |||||||| Sbjct 1504568 GTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCAGTTGATGCTGTTGGCATAGG 1504627 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | || ||| |||||| | |||||| | ||||| | ||| | | |||| Sbjct 1504628 TGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTTTTTCAAAATAGTCCA 1504687 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||||| | || | ||| | | ||| ||| | ||||||||||| ||| Sbjct 1504688 ATCCCATAAATTAGTTGGAATAGCATTCCACATATCGTATTGTAAAAT 1504735 Score = 163 bits (180), Expect = 4e-35 Identities = 225/312 (72%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||||| ||||||||||||| || || | |||||| | |||||||||||||| | Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 ||||| || | | || |||| |||||| ||||| ||||| | ||||| || || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || || ||||| | ||||||||| | || |||||| |||| ||| |||| || Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 1506635 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 | || | ||| |||||| | | | || || || || || || ||| || Sbjct 1506636 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATG 1506695 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAG 76962 || ||||| | ||| ||||||||||| || || || |||||||| || ||| |||||| Sbjct 1506696 AGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAAT 1506755 Query 76963 AAGAAAACAGCT 76974 || ||||||||| Sbjct 1506756 AA-AAAACAGCT 1506766 Score = 159 bits (176), Expect = 5e-34 Identities = 272/392 (69%), Gaps = 8/392 (2%) Strand=Plus/Plus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||| |||||||||||||| ||| || ||| ||||||||||| || |||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| |||||||| | |||||| | ||| | ||| || | | ||||| ||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 1505196 Query 76239 AATCAAATTTTCCATCTATC------ACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||||||| || || || ||||||||||||| ||| || || |||| ||||| Sbjct 1505197 AATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 1505256 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || |||| | | ||| ||| || | | || || |||| |||||||| | Sbjct 1505257 AGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTTT 1505316 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAGAACA 76411 | || ||||| | |||||| || || || |||| |||| || |||||||| | | Sbjct 1505317 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGA-TCTTTATAAAGCATA 1505375 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 76471 | |||||||| ||||||| || || | ||||| | |||| | ||||||||| Sbjct 1505376 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTTGA 1505435 Query 76472 ATTATAGATTTGTATCGCTTCTCTCTTTCATA 76503 ||| ||| |||| ||||| | ||||| Sbjct 1505436 ATTTGTCGTTTATATCTTTTCTCATTCTCATA 1505467 Score = 138 bits (152), Expect = 2e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 ||||||| | ||||||||||| |||||||||||| ||||||||||| |||||| | Sbjct 1505711 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 1505770 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| || | ||| | ||| ||| ||| ||||||||||| ||||||||||||| Sbjct 1505771 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 1505830 Query 76626 ATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||||| |||| |||| | |||| |||||| || ||||| Sbjct 1505831 ATAGAGCATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || || || | | |||||| ||||| ||||| || ||||| ||||| || Sbjct 1504847 ATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCACCATA 1504906 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | |||||| || || | ||||||| | ||| ||||| ||| ||||| ||||| Sbjct 1504907 ATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATA 1504966 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | || |||||||||||| || || |||| ||||||||| Sbjct 1504967 GCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 Score = 98.7 bits (108), Expect = 1e-15 Identities = 177/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||||||||| || || ||| | |||| ||| | ||| ||||||||||| || || Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | ||| || | | ||| || ||||| ||| || | ||||| ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | || || || | ||| ||||||||||| |||| ||| || || || |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 || || || | |||| | ||||| ||||||||||| || || ||| ||||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 77213 TAAATAATAACCGAATTTA 77231 ||||| || | ||||||| Sbjct 1507070 TAAATTATTGCAGAATTTA 1507088 >seq50 Length=3512070 Score = 161 bits (178), Expect = 1e-34 Identities = 162/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 |||||||| ||||| | | ||||||||||||||||| ||||| || || | ||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATT 47018 || || ||||| | ||| || || || ||||| ||| || |||||||||| |||| ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCA-ACAAGATT 996567 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 |||||| || ||||||||| ||| ||||||||||| || ||||| ||||||| ||| Sbjct 996568 CTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTT 996627 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCA 47106 |||| || ||| | |||||||| ||| Sbjct 996628 TTCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 132 bits (146), Expect = 7e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAC 46485 ||| ||| |||||| | ||||||||| || | |||||||||||| ||||| ||||| Sbjct 995787 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 995846 Query 46486 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAAC 46545 ||| | || ||| ||||| ||||| | || || |||| || || || | ||| Sbjct 995847 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 995906 Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 ||||||||||| ||||||||||| || || ||||| ||| ||| | |||| Sbjct 995907 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTT 995966 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATG 46646 || | | ||||| |||||||||||||||||||||||||| Sbjct 995967 TGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 996007 Score = 102 bits (112), Expect = 1e-16 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | ||| |||||||| ||||||| || || || || |||||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGT 47232 ||| |||||| | |||| || ||||||| |||||||||| |||||||| || ||| | Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAA-T 996853 Query 47233 ATAGGTTC 47240 | ||||| Sbjct 996854 AATGGTTC 996861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712898396812800