Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq108 134 1e-26 seq1683 111 1e-19 seq2544 96.9 3e-15 seq31 96.9 3e-15 >seq108 Length=811940 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || | || || ||||| ||||| | ||| ||| | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| ||||||| ||||||||||| |||| || ||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || || || | ||| || ||||| ||||||||| | ||| | ||||||||||| Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||||||||| ||| | || ||||| || || ||||| Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 249227 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||||||||| | || || ||||| ||||| | ||| ||| | Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || ||| |||||| || |||||||| |||| |||||| Sbjct 251133 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCA 251074 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111276 ||| || | |||| ||| || ||||||||||||||| || | ||| | | |||||| Sbjct 251073 ACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTT--CTGATTAT 251016 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||||||||||||||| ||| | || ||||| || || ||||| Sbjct 251015 AATATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 250966 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || || | || || ||||| ||||| | ||| ||| | | Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || |||||| || |||||||| |||| ||||||| Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAA 250617 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || || | |||| ||| || ||||| |||||||| || | ||| | | ||||||| Sbjct 250616 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCG--GATTATA 250559 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||||||||| |||||||||||||| |||||| || | ||||| Sbjct 250558 ATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGG 250510 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| ||||| || ||||| || || |||| || || Sbjct 251420 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTAGAGGCCTCA 251361 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| |||||| ||||| ||||| |||| ||||| Sbjct 251360 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 251301 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATA 111277 ||||| | || | ||| || |||||| | |||||| | | | ||| | ||||||| Sbjct 251300 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTAT--CTGATTATA 251243 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| |||||||| || |||||||||||||| |||||| || | ||||| Sbjct 251242 ATATTCAAAAAGAGTCAACACTACATTTAGTATTGCGTTTGAGAGGTGG 251194 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || | || || ||||| ||||| | ||| ||| | | Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||||| ||||||||||| |||| |||||| Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 249106 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || || | || | ||| || ||||||||||||||| | | ||| | | ||||||| Sbjct 249105 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTT--CTGATTATA 249048 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||||||||| || || || | || | ||||| || ||||| Sbjct 249047 ATATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGG 248999 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 111175 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111234 |||||| ||||||| ||||||||||| |||| || ||||| || || || | | Sbjct 249606 GTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAACAGAGACTGATCTTT 249547 Query 111235 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111294 || || ||||| ||||||||| | ||| | ||||||| ||||| |||||||||||| Sbjct 249546 GCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAAAAGAATCT 249487 Query 111295 ACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||| | || ||||| || || ||||| Sbjct 249486 ACACTTCATCTTGTTTTGCGACTTCGTGGTGG 249455 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| | || || || || ||||| | ||| ||| | | Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| || ||| ||||||||||| |||| || ||| Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 250845 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | || | ||| || ||||||||||||||| ||| | ||||||| ||| Sbjct 250844 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAAT 250785 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || || ||| | || | || || || ||||| Sbjct 250784 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACGACTTCGTGGTGG 250738 >seq1683 Length=220 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 111102 GCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGA 111161 ||||||||| ||||| || | || || ||||| ||||| | ||| ||| | || Sbjct 1 GCAAATTTTCGTCAAGACTCTTACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGA 60 Query 111162 TTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACA 111221 | || ||| | || || |||||| ||||||||||| ||||| || ||||| Sbjct 61 TACTATTGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCCCCTGACCAACA 120 Query 111222 AAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATAT 111281 ||| | |||| ||| || ||||| |||||||| | ||| | | ||||||||||| Sbjct 121 AAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCTGATTATAATAT 180 Query 111282 ACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCG 111320 ||||||||||||||||| ||| | || ||||| || || Sbjct 181 CCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCG 219 >seq2544 Length=277 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| | || || ||||| ||||| | ||| ||| | Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| || || ||||| |||| |||||| Sbjct 116 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCAA 175 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || || || | ||| || || || ||||||||| ||| | ||||||| ||| Sbjct 176 CAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAT 235 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCG 111320 || ||||||||||||||||| ||| | || ||||| || || Sbjct 236 ATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCG 276 >seq31 Length=1439309 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||||||||| | || || || || ||||| | ||| ||| | Sbjct 960986 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960927 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | ||||| || ||| || |||||||| |||| ||||| Sbjct 960926 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960867 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | | |||| ||| |||||||| | |||||| | ||| | | |||||||| Sbjct 960866 ACAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCTGATTATAA 960807 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || ||||||||||| || ||| | || ||||| || ||||| || Sbjct 960806 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGCGACTTCGCGGAGG 960759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||||||||| ||||| || |||||| | | |||| ||| || ||||| | ||| Sbjct 964455 GACAAAGAAGGAATTCCCCCTGACCAACAACGTTTGATTTTTGCTGGTAAACAGCTAGAA 964396 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| | |||| | | ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 964395 GATGGAAGAACTCTCTCAGATTATAATATCCAAAAGGAATCTACACTCCATTTAGTGTTG 964336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||||||||| | || || || || ||||| | || ||| | Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | ||||| || ||| ||||||||||| ||||| || || Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 961388 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | | |||| ||| || |||||| | |||||| | ||| | | |||||||| Sbjct 961387 ACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAA 961328 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || ||||||||||| || ||||| || ||| | || || || || Sbjct 961327 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGG 961280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||||||||| | || || || || ||||| | ||| ||| | Sbjct 960758 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960699 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | |||||| || ||| || |||||||| |||| ||||| Sbjct 960698 GGATACAATAGAGAACGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960639 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | |||| ||| || |||||| | |||||| | ||| | ||||| || Sbjct 960638 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGATTACAA 960579 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||||||||||||||| || || || ||| | || || || || Sbjct 960578 TATCCAAAAAGAATCTACACTGCACTTGGTATTGAGACTTCGAGGAGG 960531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421790431071040