Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq50 122 9e-23 >seq50 Length=3512070 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 ||||| || ||||||||||||| ||| ||||||||| ||||||| |||||| || || Sbjct 996439 ATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 996498 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 || ||||| ||||| ||||| | || || | | ||| || || | | ||||| || Sbjct 996499 AACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 996558 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | | | ||| || || || || |||||| ||| ||||| || || | |||| ||| Sbjct 996559 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 996618 Query 23952 AAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCA 23988 ||||||| ||||| | | ||| || ||||||||| Sbjct 996619 AAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 23341 CTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400 |||||||| |||||||| |||||||||||||| | | | |||| || ||||| | || Sbjct 995823 CTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTATCATTTCA 995882 Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGA 23460 || || | ||||| || ||| || |||||| |||||||| |||| || |||| Sbjct 995883 ACAGGTAATGCATCTGTCAAAAATTCTTGTTCAATTTTGACAGCATCCTTAA-TAATTGA 995941 Query 23461 ACAATAACTTCTTCACTAGGTGGATATTTTAAA---TACTTAAACAATAAACATGCAAAA 23517 | ||| |||| || ||| | || || | | || |||| ||||||||||||| Sbjct 995942 --TGTGACTCGTTCAGAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGCAAAA 995999 Query 23518 TCACAATGTA 23527 |||||||||| Sbjct 996000 TCACAATGTA 996009 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| || ||| |||||||||||| || || | |||| || || ||||||||||| || Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATT 23297 ||| || |||| |||||| |||||||| ||||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521461664856000