Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq31 116 3e-21 seq108 87.8 1e-12 >seq31 Length=1439309 Score = 116 bits (128), Expect = 3e-21 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| ||||||||||| |||||||| || || || || ||||| ||||| Sbjct 964090 CATTCCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTTATAATC 964149 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || || || || || |||||||| ||||| || |||||| Sbjct 964150 TGAAAGAGTT--CTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCT 964207 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | ||||| || || ||||| |||| || ||| |||| ||||| | | Sbjct 964208 GGAGGAATTCCTTCTTTATCTTGAATCTT-AGCTTTAACATTCTCTATTGTGTCTGAAGC 964266 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| ||||| || ||||| || || || ||||||||||| Sbjct 964267 TTCAACTTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGCAT 964320 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| |||| |||||||| |||| ||| || || || |||||||| |||||||| Sbjct 960530 TCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 960589 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 |||| | | || || || || || || ||||| ||||| || |||||||| | ||| Sbjct 960590 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 960649 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | ||||| || || ||||| |||| | |||| |||| || || | | ||| | Sbjct 960650 AATTCCTTCTTTATCTTGAATCTTA-GCTTTTACGTTCTCTATTGTATCCGAAGCTTCAA 960708 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || | ||||| |||||||| || || || || || ||||||||||| Sbjct 960709 CTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Score = 102 bits (112), Expect = 6e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | |||| ||| ||||| ||||| || || || || || || || Sbjct 960752 TTGCATTCCTCCGCGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATA 960811 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || ||||| || || ||||| |||||||| || ||||| Sbjct 960812 ATCAGAGAGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATC 960871 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | ||||| || || ||||| ||| | |||| |||| || || | | Sbjct 960872 AGGAGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTAC-GTTCTCTATCGTATCCGAAG 960930 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| |||||||| ||||| || || || ||||||||||| Sbjct 960931 CTTCAACTTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 960985 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| |||||||| |||| ||||| || || || || || || || Sbjct 961273 TTGCATTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATA 961332 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || || || || || ||||| |||||||| || || || Sbjct 961333 ATCTGAGAGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTC 961392 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | ||||| || || ||||| ||| | |||| |||| || || | | Sbjct 961393 AGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCCTTTAC-GTTCTCTATCGTATCCGAAG 961451 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| |||||||| ||||| || || || ||||||||||| Sbjct 961452 CTTCAACGTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 961506 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| |||||||| |||| ||||| || || || || || || || Sbjct 961501 TTGCATTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATA 961560 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || || || || || ||||||||||| || |||||||| Sbjct 961561 ATCTGAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATC 961620 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | ||||| || || ||||| ||| | | |||| || || | | Sbjct 961621 AGGAGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGC 961680 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||| || || | || || || ||||| || ||||| || || || || |||||||| Sbjct 961681 TTCAACTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATGAT 961737 >seq108 Length=811940 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || || ||||| || || ||||| | ||| || | || ||| Sbjct 249017 ACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCC 249076 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || ||||||||||| | ||| ||||| | ||| | ||||| |||| | | Sbjct 249077 AATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTT-CTTTGTCTTG 249135 Query 44249 ATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || ||| || | || | || ||||||| | ||| || || | ||||| || || Sbjct 249136 AATTTTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTT 249195 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| || || |||||||| Sbjct 249196 ACCCGTGAGAGTCTTGACAAAAATTTGCAT 249225 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| || |||||||||| || || | || |||| || || || |||||| Sbjct 250774 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAG 250833 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||| || || | ||| | |||||| || || ||||| || | || Sbjct 250834 ATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTTACATTT 250893 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| |||| | ||| || || | ||||| ||||||||||| || || || ||| Sbjct 250894 TCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGACG 250953 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 250954 AAAATTTGCAT 250964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359972674972680