Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_000871.1 Length=37370 Score E Sequences producing significant alignments: (Bits) Value seq1563 158 3e-34 >seq1563 Length=10698 Score = 158 bits (174), Expect = 3e-34 Identities = 529/817 (65%), Gaps = 10/817 (1%) Strand=Plus/Plus Query 6345 TGGTTCAGATGCTGGCTTGACTATTCCTCAAGATATTCAAACAGCTATTCATACATTGGT 6404 || ||| || ||||| |||||||||| ||| | || || ||||| ||||| | || Sbjct 6102 TGATTCTGAAGCTGGACTGACTATTCCAGTTGATGTACAGACTGCTATCCATACTCTAGT 6161 Query 6405 TAGTCAATACGACTCATTGCAAGAATATGTAAACGTTGAAAATGTAACTAC-GCTTACTG 6463 || ||||| ||||| || | ||||| ||||||| ||| |||| ||| | || Sbjct 6162 AAGACAATATTCGTCATTAGAAACTTTAGTAAATGTTGAAAGTGTGTCTACTGCTCA-TG 6220 Query 6464 GTTCACGTGTTTATGAAAAATGGACTGATATTACAGGCCTTGCTAATATTGATGATGAAG 6523 |||| | |||||||||||| | ||||||||| ||| ||| | ||||||||| Sbjct 6221 GTTCTAGAGTTTATGAAAAACTAGCAGATATTACACCATTTGTTAACCTGGATGATGAAA 6280 Query 6524 CAGGTAAAATTGCTGATGTTGATGATCCAAAACTTTCTCTTATCAAATACACCATCAAGC 6583 || | |||||| |||| |||||||||| || | |||| || || | | ||| | | Sbjct 6281 AAGCTCAAATTGGTGATATTGATGATCCTAAGTTAACTCTGATTAAGTTTGCGATCCATC 6340 Query 6584 GCTATGCTGGTATCTCAACAGTTACTAACAGCTTGCTTGCTGATTCTGCTGAAAATATCC 6643 | || ||||| || | || |||||||| | | | |||||| | || |||||||| | Sbjct 6341 GTTACGCTGGCATTACTACCGTTACTAATACACTTTTGGCTGATACGGCAGAAAATATTC 6400 Query 6644 TTGCTTGGCTTTCTGGTTGGATTGCCAAAAAAGTTGTTGTAACTCGTAACAAAGCTATCT 6703 ||| ||| | ||| || || | |||||| |||||||| ||||||| Sbjct 6401 TTGGCTGGTTGCAACAATGGGCAGCACGCAAGGATGTTGTGACTCGTAATCAAGCTATTC 6460 Query 6704 TGGAAGCTATTGCTGCACTTCCAACCAAACCAACATTGACTAAATGGGATGACATCATTG 6763 ||| | ||| | || ||| | || || || | ||||| | ||||| || | | Sbjct 6461 TGGCTGTTATGGGCACAGCACCAGCTAAGCCTACTATTACTAACTTTGATGATATTAAGG 6520 Query 6764 ATCTTGAAGCTAA---AGTCGACCCAGCAATCAAACAGACTTCATTCTTCTTGACTAATA 6820 | || || ||| | || |||||||| | |||||| || | ||||| Sbjct 6521 ACCTGCAAAATAATACGCTTGATCCAGCAATTATCGCAACTTCAAGCTATGTTACTAACC 6580 Query 6821 CTTCAGGCTTTACAGCTCTTAAAAAAGTCAAAAATGCTTTGGGTGACTACCTAATGGAAC 6880 || || |||| | ||| ||| | ||| |||| ||| || |||| ||| Sbjct 6581 AATCTGGTTTTAATGTTCTATCTAAAATGAAAGATGCAGATGGTCGTTATTTAATTCAAC 6640 Query 6881 GTGATGTCAAATCA-CCTACAGGCTACTCAATTGATGGCTTCGCAGTTAAAGAAGTCGCT 6939 | |||| || | | ||| || | |||| ||| |||||| ||| ||| | Sbjct 6641 CTAATGT-AACTAATCCTGAAGTTAAAGAGATTGGTGGACATGCAGTTCAAGTTATCGGT 6699 Query 6940 GACCGTTGGCTTGCTAACGGAACAGGCGGGGCTATGCCACTCTATTTTGGTGACTTGAAA 6999 || ||| | | | | || || | || || || || |||||| | || Sbjct 6700 GATAAGTGGTTACCAGATGTTTCA---GGATCACATCCGCTTTACTTCGGTGACCTAAAG 6756 Query 7000 CAAGCCGTTACGTTATTTGACCGTCAACACATGTCTCTTCTTTCAACCAATATCGGTGGC 7059 |||| |||| |||| |||||||||| |||||| || | |||| || || || || Sbjct 6757 CAAGGTATTACTTTATATGACCGTCAAAGAATGTCTGTTACTCCAACAAACATTGGAGGT 6816 Query 7060 GGAGCGTTTGAAACTGACACTACTAAAGTACGTGTTATTGACCGTTTTGATGTAGTAGCA 7119 ||||| ||||||||||| || ||||| | || ||||||| || ||||| || | | | Sbjct 6817 GGAGCATTTGAAACTGATACAACTAAGATCCGCTTTATTGATCGGTTTGACGTTGAATTA 6876 Query 7120 ACTGATACAGAAGCATTTGTGCCAGCATCATTCAAAG 7156 | |||| | ||||||| | || ||||| |||| Sbjct 6877 ATTGATGATGGTGCATTTGCAGCTGCTTCATTTAAAG 6913 Score = 149 bits (164), Expect = 1e-31 Identities = 454/684 (66%), Gaps = 32/684 (5%) Strand=Plus/Plus Query 3288 TTCAATGTTTAGCGATAATACGGCGATTGGCTTTGTTTATCCATATTTGGGCGAAG-ATG 3346 |||||||||| || ||||| |||||||| ||||||||||||||| |||| | | Sbjct 3023 TTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATCAAAATGAAGAAGG 3082 Query 3347 GCAGTCAGAAGTGGCATGTAGAACAGCACAGCTTCATCCCTTGGCAACAAGCAGGTTCGT 3406 |||| || | |||||| | | || ||||| || || || ||||||||||| || ||| Sbjct 3083 GCAGCCACGA-TGGCATATTGCTCAACACAGTTTTATTCCGTGGCAACAAGCCGGATCGC 3141 Query 3407 TGGAAGCCAAAATGGAGCAGGACGGTGTCAATTATCGAGACTTGGAAGCCAAGGGCTTTT 3466 | || || ||| |||| || ||| | ||||| || || || | |||| Sbjct 3142 TTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTATCATGAGTT----TCC--TGAGTTTT 3195 Query 3467 GTACGATTACAAGCCACCCACAAGGACTTATCAATCCAGAGGAGGTTTATCGCTGGTTTG 3526 |||| || || || | ||||| |||| |||||||| | |||||| ||| || Sbjct 3196 GTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAACAAGTTTATAAATGGCTTT 3255 Query 3527 TAGATTATGTCGAAGACAACGCACTT--GACGTTGTCTTCTTTGGATATGAC-------G 3577 |||| ||||| |||| ||| || || | || | ||||||||||||||| | Sbjct 3256 TAGACTATGTTGAAG--AACACAATTTAAAGGTCATTTTCTTTGGATATGACCGTTTTGG 3313 Query 3578 CTATGAT--GATTAATAAAATTA-TCAAAGCATTGGAATCTAATACAAGTCTTCCACTCA 3634 | | || | | || || |||| | ||||| || | | |||||| || | | ||| Sbjct 3314 CAGTTATCAGGTAAAGAATATTACTGAAAGC-TTAAATGCCAATACAGGTGGTTAATTCA 3372 Query 3635 TGCCAATCAGACAACGGACAAGCGAGCTAAAAGACCCTACAAAATTCCTTCA--AACACT 3692 | | || |||| ||||||||||||| | ||||| ||||| | || || || Sbjct 3373 AGAC-ATAGCACAAAGGACAAGCGAGCTTGCCAATCCTACTAAATTTTTGCAAGAAAGCT 3431 Query 3693 AT-TTATCGAAGGAAATATCACTCGTCTTGATGATGAAATCATGCGAAAAGCCTTGATAA 3751 | || || ||||| || || || | | ||| || | |||||| ||| | | Sbjct 3432 TTGCTACCG--GGAAA-ATTACCCGGTTCAACGATCCGATTTTAGAAAAAGCATTGCTTA 3488 Query 3752 ATGCTGTGATTAAGGAAGATAACATAGGTATCCAAGTAGACAAAATGAAATCCAC-CTAC 3810 ||||| ||||| |||||||| || || || ||||| ||||| ||| | || ||| Sbjct 3489 ATGCTTCTATTAAAGAAGATAAAATCGGGATACAAGTTGACAAGGATAAAGCTACTCTA- 3547 Query 3811 AAGATTGACGTGGTGGATGCTCTTATTGATGCTTTTTACGATGGTATGTATGCGTTTGAA 3870 || ||||| ||||| ||||| | |||||||| | || | || ||| | |||||| Sbjct 3548 AAAATTGATGTGGTTGATGCATTAATTGATGCAATGTATCAAGGGATGAACCATTTTGAA 3607 Query 3871 GACTACGCTATTACCAACAATCCAACGTGGAAAGTCGAACACATGAGTCAAGAAGCTGTC 3930 | || | |||| |||| || | || |||| |||| |||| |||||| || Sbjct 3608 AAGTATGGAATTATCAACGATAAATCGACTGAAGTAGAACGTATGACGCAAGAACAGGTT 3667 Query 3931 TTAGAGTGGCTTAAAAACCCAGAA 3954 ||| ||| || |||| || ||| Sbjct 3668 CTAGCATGGTTTGAAAATCCTGAA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119451127677264