Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_000872.1 Length=40739 Score E Sequences producing significant alignments: (Bits) Value seq1563 150 5e-32 >seq1563 Length=10698 Score = 150 bits (166), Expect = 5e-32 Identities = 531/825 (64%), Gaps = 12/825 (1%) Strand=Plus/Plus Query 4784 TCAGATGCTGGCTTGACTATCCCTCAAGATATTCGAACAGCTATTAATACATTGGTCCGT 4843 || || ||||| ||||||| || ||| | | || ||||| |||| | || | Sbjct 6106 TCTGAAGCTGGACTGACTATTCCAGTTGATGTACAGACTGCTATCCATACTCTAGTAAGA 6165 Query 4844 CAATTTGATTCATTGCAAGAATATGTTAATGTTGAAAACGTAACTACACTTACTGGTTCA 4903 |||| | ||||| || | || |||||||||| || |||| | |||||| Sbjct 6166 CAATATTCGTCATTAGAAACTTTAGTAAATGTTGAAAGTGTGTCTACTGCTCATGGTTCT 6225 Query 4904 CGTGTTTATGAAAAATGGGCTGATATTACTGGTCTTGCTAAACTCGATGACGAAGGCGGA 4963 | |||||||||||| || |||||||| ||| ||| || ||||| ||| | Sbjct 6226 AGAGTTTATGAAAAACTAGCAGATATTACACCATTTGTTAACCTGGATGATGAAAAAGCT 6285 Query 4964 CAAATTGGTCAAAACGATGATCCAAAACTTTCTCTTATCCGATATGCTATCAAACGCTAT 5023 ||||||||| | | |||||||| || | |||| || | ||| ||| | || || Sbjct 6286 CAAATTGGTGATATTGATGATCCTAAGTTAACTCTGATTAAGTTTGCGATCCATCGTTAC 6345 Query 5024 GCTGGTATCTCAACAGTAACTAACAGCTTGCTTGCTGATTCTGCTGAAAACATCCTTGCA 5083 ||||| || | || || ||||| | | | |||||| | || ||||| || |||| Sbjct 6346 GCTGGCATTACTACCGTTACTAATACACTTTTGGCTGATACGGCAGAAAATATTCTTGGC 6405 Query 5084 TGGTTGTCTGGTTGGATTGCTAAAAAAGTTGTTGTAACTCGTAACAAAGCTATCTTGGAG 5143 |||||| ||| || || | |||||| |||||||| ||||||| ||| Sbjct 6406 TGGTTGCAACAATGGGCAGCACGCAAGGATGTTGTGACTCGTAATCAAGCTATTCTGGCT 6465 Query 5144 GCTATCGGTACACTTCCAAATAAACCAACATTGGCTAAATGGGATGATATCATCGACCTT 5203 | ||| || ||| ||| ||| || || | |||| | |||||||| | ||||| Sbjct 6466 GTTATGGGCACAGCACCAGCTAAGCCTACTATTACTAACTTTGATGATATTAAGGACCTG 6525 Query 5204 CAAGCTAA---AGTTGACCCAGCTATTAAACAAACTTCATTGTTCTTGACTAATACTTCT 5260 ||| ||| |||| ||||| |||| ||||||| | | ||||| ||| Sbjct 6526 CAAAATAATACGCTTGATCCAGCAATTATCGCAACTTCAAGCTATGTTACTAACCAATCT 6585 Query 5261 GGATTTACTGCACTTAAGAAAGTTAAGAATGCAATGGGTGACTATTTGATGGAACGTGAT 5320 || |||| || || ||| | || ||||| ||| ||||| || ||| | || Sbjct 6586 GGTTTTAATGTTCTATCTAAAATGAAAGATGCAGATGGTCGTTATTTAATTCAACCTAAT 6645 Query 5321 GTAA--AATCACCAACAGGTTACTCA-ATCGATGGTTTTGTAGTTAAAGAAATTTCTGAC 5377 |||| |||| || |||| | || | ||| || |||| ||| || ||| Sbjct 6646 GTAACTAATCCTGAA---GTTAAAGAGATTGGTGGACATGCAGTTCAAGTTATCGGTGAT 6702 Query 5378 CGTTTCCTTCCTAATGGTACTGGTGGAGCAATGCCGCTTTACTTTGGCGACTTGAAACAA 5437 | | || ||| | | ||| || ||||||||||| || ||| | || ||| Sbjct 6703 AAGTGGTTACCAGATGTTTC---AGGATCACATCCGCTTTACTTCGGTGACCTAAAGCAA 6759 Query 5438 GCAGTAACATTGTTTGACCGTCAACACTTGTCACTTCTATCTACTAATATTGGTGGTGGA 5497 | | || || | |||||||||| |||| || | || || ||||| |||||| Sbjct 6760 GGTATTACTTTATATGACCGTCAAAGAATGTCTGTTACTCCAACAAACATTGGAGGTGGA 6819 Query 5498 GCATTTGAAACAGATACTACTAAAGTACGTGTTATTGACCGCTTTGATGTTGTATCAACT 5557 ||||||||||| ||||| ||||| | || ||||||| || ||||| |||| || || | Sbjct 6820 GCATTTGAAACTGATACAACTAAGATCCGCTTTATTGATCGGTTTGACGTTGAATTAATT 6879 Query 5558 GACACAGAAGCGTTTGTGCCAGCGTCATTCAAAGCAATTGCTGAT 5602 || | || |||| | || ||||| |||| ||| |||| Sbjct 6880 GATGATGGTGCATTTGCAGCTGCTTCATTTAAAGATATTAATGAT 6924 Score = 147 bits (162), Expect = 6e-31 Identities = 531/812 (65%), Gaps = 33/812 (4%) Strand=Plus/Plus Query 1660 AAGACATAGAAAATGCAGTCATTGATGACTTTGACATAAAAGGTAAGCGTGTATATGTCG 1719 |||| |||||||||| || |||||| || | || | ||| | ||||| ||| Sbjct 2953 AAGATGTAGAAAATGCCGTTGATGATGATTTCAAAATTGACGGTCGTCAAGTATACATCG 3012 Query 1720 GACTAGATGCTTCGATGTTTAGCGATAACACAGCTCTTGGTTTCGTATATCCCTACTTGG 1779 | | ||| ||| |||||| || || ||||| ||||||| || ||||| || Sbjct 3013 GCTTGGATTATTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATCAAA 3072 Query 1780 GTGAAGACGGT-AGCCAAAAATGGCATATTGAACAACACAGTTTCATCCCGTGGCAACAG 1838 |||||| || ||||| | |||||||||| ||||||||||| || ||||||||||| Sbjct 3073 ATGAAGAAGGGCAGCCACGA-TGGCATATTGCTCAACACAGTTTTATTCCGTGGCAACAA 3131 Query 1839 GCAGGGTCAATAGAAGCCAAAATTGAACAGGACGGTATCAACTACCGAGATTTAGAAACC 1898 || || || | || || ||| | || || ||||| || | || || || Sbjct 3132 GCCGGATCGCTTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTATCATGAGTT----TCC 3187 Query 1899 AAGGGATTTTGTACAATTACAAGCCACCCACAAGGACTTATCAACCCAGAAGAAGTGTAT 1958 | ||||||||||| || || | ||||| |||| || |||||| |||| ||| Sbjct 3188 --TGAGTTTTGTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAACAAGTTTAT 3245 Query 1959 CGCTGGTTTATAGATTATGTTGAAGACAACTCACTT--GACGTTGTCTTTTTTGGTTATG 2016 ||| || |||| |||||||||| ||| || || | || | || ||||| |||| Sbjct 3246 AAATGGCTTTTAGACTATGTTGAAG--AACACAATTTAAAGGTCATTTTCTTTGGATATG 3303 Query 2017 A------TGCCA-TGAT--GGTTAATAAAATTA-TCAAAGCATTGGAATCTAATACAAGT 2066 | || || | || ||| || || |||| | ||||| || | | |||||| || Sbjct 3304 ACCGTTTTGGCAGTTATCAGGTAAAGAATATTACTGAAAGC-TTAAATGCCAATACAGGT 3362 Query 2067 TTTCCACTCATGCCAATCAGACAACGGACAAGTGAGCTAAAAGATCCTACAAAATTCCTT 2126 | | ||| | | || |||| ||||||| ||||| ||||||| ||||| | Sbjct 3363 GGTTAATTCAAGAC-ATAGCACAAAGGACAAGCGAGCTTGCCAATCCTACTAAATTTTTG 3421 Query 2127 CAAACACTATTTATTGAGGGCAATATCACACGTCGTGATGATGAAATCATGCGGAAAGCC 2186 ||| | ||| | || || || || || | ||| || | ||||| Sbjct 3422 CAAGAAAGCTTTGCTACCGGGAAAATTACCCGGTTCAACGATCCGATTTTAGAAAAAGCA 3481 Query 2187 TTAATAAATGCAGTTATTAAAGAGGACAACATTGGTATCCAAGTAGACAAAATGAAATCC 2246 || | ||||| ||||||||| || || || || || ||||| ||||| ||| | Sbjct 3482 TTGCTTAATGCTTCTATTAAAGAAGATAAAATCGGGATACAAGTTGACAAGGATAAAGCT 3541 Query 2247 AC-CTACAAGATTGACGTGGTGGATGCTCTTATTGATGCTTTTTACGATGGCATGTATGC 2305 || ||| || ||||| ||||| ||||| | |||||||| | || | || ||| | Sbjct 3542 ACTCTA-AAAATTGATGTGGTTGATGCATTAATTGATGCAATGTATCAAGGGATGAACCA 3600 Query 2306 GTTTGAGGACTATGCTATTACCAAC---AATCCGACATGGAAAGTAGAGCACATGAGTCA 2362 ||||| | |||| |||| |||| || |||| || ||||||| | |||| || Sbjct 3601 TTTTGAAAAGTATGGAATTATCAACGATAAATCGAC-TG--AAGTAGAACGTATGACGCA 3657 Query 2363 AGAAGCTGTATTAGAGTGGCTTAAAAACCCTGAAAGTGGCTTGCTAGAGGAGTATTAATA 2422 |||| || ||| ||| || |||| |||||| || ||| ||| || || |||| Sbjct 3658 AGAACAGGTTCTAGCATGGTTTGAAAATCCTGAATCCGGATTGTTAGGGGGTGATGAATA 3717 Query 2423 -TATGATTTTAAAGTTTTTTAAGACAATTTGG 2453 | ||||| || || ||||| | |||||| Sbjct 3718 TTCTGATTAGAACATTATTTAAAAGTATTTGG 3749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130230910414452