Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2024 109 6e-19 >seq2024 Length=8919894 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||||||||| | ||| ||||||||||| || | || || ||||| | ||| Sbjct 2396611 ATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 2396670 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || |||||||| || || ||||| | |||||||||||| ||||||||| | || Sbjct 2396671 AAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 2396730 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 |||||||| || || || ||| ||| |||||||| || || | || || |||| | Sbjct 2396731 TTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 2396790 Query 16652 TTTTC 16656 ||||| Sbjct 2396791 TTTTC 2396795 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 16027 AACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT 16086 || |||||||||||| |||||||| |||||||||||||| | | || || || ||||| Sbjct 2395983 AAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTAT 2396042 Query 16087 AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAAT 16146 | | || || | || | ||||||||||| |||||| || ||| || || ||||| Sbjct 2396043 CATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTAACAGCATCCTTAAT 2396102 Query 16147 GATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 || || ||||| ||| ||| | || | |||||| ||||||| ||| || Sbjct 2396103 AATTGATGTAACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGC 2396162 Query 16207 GAAGTCGCAATGTAGTCC 16224 || || ||||||| ||| Sbjct 2396163 AAAATCACAATGTAATCC 2396180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511363603764720