Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2024 156 5e-33 seq1429 156 5e-33 >seq2024 Length=8919894 Score = 156 bits (172), Expect = 5e-33 Identities = 161/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || |||||||| || | | ||||||||| ||||||| ||||| ||||| | |||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || |||||||| | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2396733 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2396734 TCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2396793 Query 24585 TCGTCTGG-TGTTAGTTTATTCCAATCA 24611 || |||| |||| |||||||||||| Sbjct 2396794 TC-ACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 ||||||| | ||| |||||||||||||||||||| ||||| || || ||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||| || ||| | ||||||| ||||||| |||||||||| |||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTT 2397008 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||| ||| | || ||| ||| || ||||| ||||| || || | |||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || || | ||||| ||| ||||||||| ||||||||||| ||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 24333 ||| | | ||| | || ||| || ||||| |||||| ||| ||||||| | Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 | || ||| ||||| |||| | || ||||||||||| | | ||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAAAAGT 2396514 Score = 89.7 bits (98), Expect = 6e-13 Identities = 155/224 (69%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 23941 TTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCA 24000 ||||| | || ||||| || ||||||||||| ||||| || |||||| ||| | Sbjct 2395964 TTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATAA 2396023 Query 24001 TTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 24060 || ||| ||||| ||||| | || ||| || | || | || | |||||||||||||| Sbjct 2396024 GTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAA 2396083 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG-----ATACAA 24115 | || || || | ||||| ||| | || | ||||| | ||| ||||| Sbjct 2396084 TTTTAACAGCATCCTTAATAATTGATGTAAC---TCGTTCACAAGATGGTTTTTGTACAA 2396140 Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 | ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 2396141 T--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 >seq1429 Length=9113309 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 53057 TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 53116 || ||||| ||| || | | ||||| ||| || || || |||| ||| | | ||| Sbjct 7667341 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 7667282 Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176 || |||||| ||| | | ||| ||||| || |||||||| ||||| |||| ||||| Sbjct 7667281 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 7667222 Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236 | ||||||||||| ||||| || ||||| | ||| ||||||||||| |||||||| || Sbjct 7667221 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 7667162 Query 53237 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 53287 |||||||| || ||||| ||||| | || ||| |||||||| || ||| Sbjct 7667161 GTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATAT 7667111 Score = 152 bits (168), Expect = 6e-32 Identities = 227/315 (72%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || || ||||| ||||||||||| || || | | |||||| | |||||| ||||| || Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 ||||| | | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || || ||||| | ||||||||| | |||||| ||| ||||| || || || ||| | Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 7665082 Query 54275 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAG 54331 | || || || |||||| | || | | || || || || || || |||| Sbjct 7665081 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTA 7665023 Query 54332 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 54390 || | |||||||| |||||| ||||| || || || || |||||||| || ||| |||| Sbjct 7665022 ATGAGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTT 7664963 Query 54391 AAGTAGAAAACAGCT 54405 || || |||||| || Sbjct 7664962 AA-TAAAAAACAACT 7664949 Score = 129 bits (142), Expect = 7e-25 Identities = 224/322 (70%), Gaps = 14/322 (4%) Strand=Plus/Minus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| |||||||||||||| ||| || || ||||||||||||||||||||||| | Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 ||| |||||||| | ||| || | | |||||| |||| || | | ||||| Sbjct 7666616 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 7666560 Query 53667 GAAAATCAAATTGTCCATCTA-------TTACAAACATGTTCAATGCAATAGATGCCAGA 53719 ||||||||||| | || || |||||||||| || | ||||| || || | | Sbjct 7666559 GAAAATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAA 7666501 Query 53720 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 53779 ||||| || || || |||| | | | ||| || | | || || || | ||||||| Sbjct 7666500 TTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTA 7666441 Query 53780 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 53839 | ||| || ||||||| |||||| ||||| || || || ||| |||||||| Sbjct 7666440 CTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGC 7666381 Query 53840 ATGAATGGCGTACCAGTTTCAA 53861 || |||| || || ||||||| Sbjct 7666380 ATATATGGAGTTCCTGTTTCAA 7666359 Score = 100 bits (110), Expect = 3e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 ||||||| | |||||| || | |||||||||| | | |||||| |||||| | Sbjct 7665982 GTGTATAAAGAATTTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTG 7665923 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||| || | ||| || | |||| |||||||||||||| |||||||| |||| Sbjct 7665922 GACACATTAAAGTCCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 7665863 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 | ||||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 7665862 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||| || || |||| |||| | ||||| |||||||| || || ||||| ||| Sbjct 7666927 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCTAAAGCA 7666868 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||| | ||||| || |||| |||| || | |||||| || || |||||| Sbjct 7666867 CCATAATACAATGTTTCAAATATCTGAATATTAAGTTTTTGTGCCTCTTCACTTTCAAAT 7666808 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 |||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 7666807 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 7666758 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 7664882 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 7664823 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 7664822 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATA 7664763 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 | ||||| || | ||||||||| ||||| ||||||||||| | || | |||||| Sbjct 7664762 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 7664703 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 | || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 7664702 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 7664643 Query 54644 TAAATAAT 54651 ||||| || Sbjct 7664642 TAAATTAT 7664635 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 7667612 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 7667553 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||||| |||||| || || || || | ||||| |||||||||| || | | Sbjct 7667552 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 7667493 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 ||||||| |||||||||| |||||||||| Sbjct 7667492 TTTGTGGTATTTCCCAAACTGTTTTATAAA 7667463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593662628602080