Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1955 104 2e-17 seq3153 95.1 1e-14 seq2112 91.5 1e-13 seq74 84.2 2e-11 >seq1955 Length=5322578 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 28957 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 29016 |||||||||| || || | || || || || || |||||||| ||| ||| ||| Sbjct 1861942 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 1861883 Query 29017 CCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 29076 | |||| || | | || | ||| || ||| ||||||||||| | || || Sbjct 1861882 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 1861823 Query 29077 ATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATT 29136 |||||||| | | || ||||| ||||||||||| |||||| | ||| | | |||| Sbjct 1861822 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 1861763 Query 29137 ACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | ||||||||||| || ||||||||||| | || || || | ||||| || Sbjct 1861762 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGG 1861711 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 28957 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 29016 |||||||||| || || | || || || || || |||||||| ||| ||| ||| Sbjct 1864582 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 1864523 Query 29017 CCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 29076 | |||| || | | || | ||| || ||| ||||||||||| | || || Sbjct 1864522 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 1864463 Query 29077 ATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATT 29136 |||||||| | | || ||||| ||||||||||| |||||| | ||| | | |||| Sbjct 1864462 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 1864403 Query 29137 ACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | ||||||||||| || ||||||||||| | || || || | ||||| || Sbjct 1864402 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGG 1864351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || ||||||| | || || ||||| || || ||| ||| | | Sbjct 1861256 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTC 1861197 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | || || ||| ||||||||||| | || ||||| Sbjct 1861196 AGACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCA 1861137 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | || ||||| |||||||| || |||||| | |||| | | |||||||| Sbjct 1861136 GCAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAA 1861077 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || || ||||||||||| |||| || ||| | || ||||| Sbjct 1861076 TATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGG 1861029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || |||||||||||||| ||| ||| | | Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| ||||||||||| | || |||||| Sbjct 1861421 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAG 1861362 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | |||||||| || ||||| || |||||| | |||| | | ||||| ||| Sbjct 1861361 CAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCT--CAGATTATAAT 1861304 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| || || | ||||| || | |||||||| Sbjct 1861303 ATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGAGGAGG 1861257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || |||||| | | || ||||| |||||||| || |||||| | |||| | | ||| Sbjct 1860914 GACCAACAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTCTCAGAT 1860855 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || ||||||||||| |||| || ||| | |||||||| Sbjct 1860854 TATAATATTCAGAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGAGGAGG 1860802 >seq3153 Length=1268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| | || || |||||||| || ||| ||| | || Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||| ||||||||||| | || ||||||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | |||||||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| || || | || ||| || | |||||||| Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGG 1195 >seq2112 Length=2858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || ||||||||| | || |||||||||||| | || ||||| || ||| Sbjct 21 AAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCTGGAAAA 80 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||||||| | ||| | ||||||| |||||||| || |||||||| ||||| Sbjct 81 CAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAAAAGAATCTACACTTCAT 140 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || || ||| | || || || Sbjct 141 CTTGTTTTGCGACTTCGTGGTGG 163 >seq74 Length=1704272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||||| | |||||||| || |||||| |||||||| | || | | ||||| Sbjct 1126101 TCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAGGACACTCTCAGATTA 1126160 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||||| | || ||||| |||| ||| | || || Sbjct 1126161 TAATATTCAGAAGGAATCTACATTACATTTGGTGCTACGTTTAAGGGGTGG 1126211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428294519138630