Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2112 100 2e-16 seq3153 95.1 1e-14 seq1955 95.1 1e-14 seq74 84.2 2e-11 >seq2112 Length=2858 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || ||||||||| | || |||||||||||| | || ||||| || ||| Sbjct 21 AAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCTGGAAAA 80 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| | ||| | ||||||| ||||||||||| |||||||| ||||| Sbjct 81 CAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAAAAGAATCTACACTTCAT 140 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || || ||| | || || || Sbjct 141 CTTGTTTTGCGACTTCGTGGTGG 163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || | ||||| ||||| ||||| ||| ||| | | Sbjct 164 AATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTC 223 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || ||||||| || || |||||| | || || || Sbjct 224 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGTATTCCACCTGACCA 283 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTAC 25211 ||| ||| | |||||||| || |||||||| |||||| | | ||| | ||||||| Sbjct 284 ACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTT--CCGATTAT 341 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||| ||||| ||||||||| | || | || | ||||| || Sbjct 342 AATATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGG 391 >seq3153 Length=1268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| | || || |||||||| || ||| ||| | || Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| ||||||||||| | || ||||||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | |||||||| || |||||| | |||||| | ||| | | ||||||||| Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| |||||||| || || | || ||| || | |||||||| Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGG 1195 >seq1955 Length=5322578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||||||||| || || | || || || || || |||||||| ||| ||| ||| Sbjct 1861942 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 1861883 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | |||| || | | || | ||| || ||| ||||||||||| | || || Sbjct 1861882 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 1861823 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||| | | || ||||| ||||||||| | |||||| | ||| | | |||| Sbjct 1861822 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 1861763 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | |||||||| || || ||||||||||| | || || || | ||||| || Sbjct 1861762 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGG 1861711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||||||||| || || | || || || || || |||||||| ||| ||| ||| Sbjct 1864582 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 1864523 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | |||| || | | || | ||| || ||| ||||||||||| | || || Sbjct 1864522 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 1864463 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||| | | || ||||| ||||||||| | |||||| | ||| | | |||| Sbjct 1864462 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 1864403 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | |||||||| || || ||||||||||| | || || || | ||||| || Sbjct 1864402 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGG 1864351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || ||||||| | || || ||||| || || ||| ||| | | Sbjct 1861256 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTC 1861197 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || || ||| ||||||||||| | || ||||| Sbjct 1861196 AGACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCA 1861137 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | || ||||| |||||||| | |||||| | |||| | | |||||||| Sbjct 1861136 GCAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAA 1861077 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| || ||||||||||| |||| || ||| | || ||||| Sbjct 1861076 TATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGG 1861029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| | || |||||||||||||| ||| ||| | | Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || || ||| ||||||||||| | || |||||| Sbjct 1861421 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAG 1861362 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | |||||||| || ||||| | |||||| | |||| | | ||||| ||| Sbjct 1861361 CAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCT--CAGATTATAAT 1861304 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| |||||||| || || | ||||| || | |||||||| Sbjct 1861303 ATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGAGGAGG 1861257 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || ||||||| | || || ||||| || || ||| ||| | | Sbjct 1861710 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 1861651 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| || ||| || |||||||| | ||| || || Sbjct 1861650 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 1861591 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | |||||||| || |||||||| |||||| | |||| | | ||||| || Sbjct 1861590 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAA 1861531 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||||||||| || || | || || || | |||||||| Sbjct 1861530 TATCCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTCGAGGAGG 1861483 >seq74 Length=1704272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||||||||| | |||||||| || ||||||||||||||| | || | | ||||| Sbjct 1126101 TCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAGGACACTCTCAGATTA 1126160 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||| | || ||||| |||| ||| | || || Sbjct 1126161 TAATATTCAGAAGGAATCTACATTACATTTGGTGCTACGTTTAAGGGGTGG 1126211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410757017667644