Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1883 116 3e-21 >seq1883 Length=454209 Score = 116 bits (128), Expect = 3e-21 Identities = 185/262 (71%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 97369 CCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGG 97428 ||||||||| ||||| | | | | ||| |||| ||| |||||||| |||||||| Sbjct 61306 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 61247 Query 97429 AATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAA 97488 |||||||||| ||| || | ||||||||||| ||||| |||||| |||||| Sbjct 61246 AATCCATAAATAGGACCTAAATCTCCTTCTTCCCTATCTGTAAAACCACAAGAATCTAAG 61187 Query 97489 TAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT--GCTGCAAGCTCTTTGC 97546 | | || | ||| ||||||||||| || ||| | | ||| || | || || Sbjct 61186 AACTCACGTGAACTATTCGCATCCCAAATATGAACATCCTTTTCGCT-TAATTTTTTAGC 61128 Query 97547 TGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTC 97606 | || ||||| | || ||||| || ||||||||||| |||||| |||||||||| | Sbjct 61127 -ATTTGTGGATCCATTAATGAACCATAATAATTCTTCCACTACACCTTTCCAAAATACGC 61069 Query 97607 TCTTAGTTGTTAAGAGAGGAAA 97628 || || ||||| | ||||| Sbjct 61068 GTTTTGTAGTTAATAATGGAAA 61047 Score = 104 bits (114), Expect = 2e-17 Identities = 177/252 (70%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 ||| || | |||| || |||||| |||||| ||||| ||||| || || || || || Sbjct 61635 ATGTGCCAGCATATAAATTAATAAAGAATAAGATGCAATATTAAATGGTACACCAAGACC 61576 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 |||||| || ||||||||| | || || || | | | ||| | |||||||| || Sbjct 61575 CATATCCGCACTTCTTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTG 61516 Query 97242 ACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCAC 97300 | ||| ||| ||||| || || || ||||||||||||| ||| | |||||| || Sbjct 61515 AA-CAAAACAATGACAAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGCTG 61457 Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGT-GTATGGTATTAATTATCTGCTTTAAT 97359 ||| | ||||||||||| ||||| | | |||| ||| || | | |||||| Sbjct 61456 TCATTATAATTCTTCTATC-ATTGGGAGAATATCGTATCTTATCTATAACTTCTTTTAAT 61398 Query 97360 TGATCAANNCCT 97371 ||||||| ||| Sbjct 61397 TGATCAATACCT 61386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346750416787220