Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002072.2 Length=34815 Score E Sequences producing significant alignments: (Bits) Value seq1563 131 4e-26 seq2131 98.7 2e-16 >seq1563 Length=10698 Score = 131 bits (144), Expect = 4e-26 Identities = 524/824 (64%), Gaps = 14/824 (2%) Strand=Plus/Plus Query 5353 TGGTTCTGATGCAGGTTTGACTATTCCTCAAGATATTCGCACAGCTATCAATACATTGGT 5412 || |||||| || || |||||||||| ||| | | || |||||| |||| | || Sbjct 6102 TGATTCTGAAGCTGGACTGACTATTCCAGTTGATGTACAGACTGCTATCCATACTCTAGT 6161 Query 5413 TCGTCAATACGATTCATTGCAAGAGTATGTAAATGTTGAGAACGTAACTACTCTTACTGG 5472 | ||||| ||||| || | ||||||||||| | || ||||| | ||| Sbjct 6162 AAGACAATATTCGTCATTAGAAACTTTAGTAAATGTTGAAAGTGTGTCTACTGCTCATGG 6221 Query 5473 TTCACGTGTTTATGAAAAATGGACTGATATTACAGGTCTTGCTAATATTGATGATGAAGC 5532 ||| | |||||||||||| | ||||||||| ||| ||| | ||||||||| Sbjct 6222 TTCTAGAGTTTATGAAAAACTAGCAGATATTACACCATTTGTTAACCTGGATGATGAAAA 6281 Query 5533 AGGTAAAANNNNNNNNNNNNNNNNNCCAAAACTTTCTCTTATCAAATACACTATCAAGCG 5592 || | ||| || || | |||| || || | | ||| | || Sbjct 6282 AGCTCAAATTGGTGATATTGATGATCCTAAGTTAACTCTGATTAAGTTTGCGATCCATCG 6341 Query 5593 CTATGCTGGTATCTCAACAGTTACTAACAGCTTGCTTGCTGACTCTGCTGAAAATATCCT 5652 || ||||| || | || |||||||| | | | ||||| | || |||||||| || Sbjct 6342 TTACGCTGGCATTACTACCGTTACTAATACACTTTTGGCTGATACGGCAGAAAATATTCT 6401 Query 5653 TGCATGGTTGTCTGGTTGGATTGCTAAAAAAGTTGTGGTTACTCGTAACAAGGCAATCTT 5712 || |||||| ||| || || | ||| || |||||||| | || || | Sbjct 6402 TGGCTGGTTGCAACAATGGGCAGCACGCAAGGATGTTGTGACTCGTAATCAAGCTATTCT 6461 Query 5713 GGGTGTTGTTGACAAACTCCCAACTAAACCAACGTTGACTAAATGGGACGATATTATTGA 5772 || |||| | | || | ||| |||| || || | ||||| | || ||||||| || Sbjct 6462 GGCTGTTATGGGCACAGCACCAGCTAAGCCTACTATTACTAACTTTGATGATATTAAGGA 6521 Query 5773 CCTTGAAGCTAAAG---TTGACCCAGCTATCAAACAAACTTCATTCTTCTTGACTAACAC 5829 ||| || ||| |||| ||||| || | ||||||| || | |||||| Sbjct 6522 CCTGCAAAATAATACGCTTGATCCAGCAATTATCGCAACTTCAAGCTATGTTACTAACCA 6581 Query 5830 TTCAGGCTTTACAGCTCTTAAAAAAGTCAAAAATGCTTTGGGTGACTACCTCATGGAACG 5889 || || |||| | ||| ||| | ||| |||| ||| || | || ||| Sbjct 6582 ATCTGGTTTTAATGTTCTATCTAAAATGAAAGATGCAGATGGTCGTTATTTAATTCAACC 6641 Query 5890 TGATGTAA--AATCACCAACTGGATATTCA-ATCGCTGGTTTTGCAGTTAAAGAAATTTC 5946 | |||||| |||| || | || | || | ||| ||||||| ||| || Sbjct 6642 TAATGTAACTAATCCTGAAGT---TAAAGAGATTGGTGGACATGCAGTTCAAGTTATCGG 6698 Query 5947 TGACCGCTGGCTTCCTAACGCTTCATCAGGAGTTATGCCGCTTTACTTTGGTGACTTGAA 6006 ||| ||| | || | | |||| | | | ||||||||||| |||||| | || Sbjct 6699 TGATAAGTGGTTACCAGATGTTTCAGGATCACAT---CCGCTTTACTTCGGTGACCTAAA 6755 Query 6007 ACAAGCGGTAACATTGTTTGACCGTCAACAAATGTC-ATTGCTATCTACCAATATTGGTG 6065 |||| | || || | |||||||||| |||||| || || | || || ||||| | Sbjct 6756 GCAAGGTATTACTTTATATGACCGTCAAAGAATGTCTGTTACT-CCAACAAACATTGGAG 6814 Query 6066 GTGGTGCGTTTGAAACTGACACTACTAAAGTACGTGTTATTGACCGTTTTGATGTAGTAG 6125 |||| || ||||||||||| || ||||| | || ||||||| || ||||| || | | Sbjct 6815 GTGGAGCATTTGAAACTGATACAACTAAGATCCGCTTTATTGATCGGTTTGACGTTGAAT 6874 Query 6126 CAACTGATACAGAAGCATTTGTGCCAGCATCATTTAAAGCTATT 6169 || |||| | ||||||| | || |||||||||| |||| Sbjct 6875 TAATTGATGATGGTGCATTTGCAGCTGCTTCATTTAAAGATATT 6918 Score = 129 bits (142), Expect = 1e-25 Identities = 488/756 (65%), Gaps = 30/756 (4%) Strand=Plus/Plus Query 2221 TGAAAGATATCGAAAATGCAGTTATTCCTGAGTTTGACATACGTGGTAAGCGAGTTTATG 2280 || ||||| | |||||||| ||| | ||| || | || ||| | ||| || Sbjct 2950 TGCAAGATGTAGAAAATGCCGTTGATGATGATTTCAAAATTGACGGTCGTCAAGTATACA 3009 Query 2281 TAGGATTGGATGCATCAATGTTCAGCGATAATACAGCCATTGGCTTCGTCTATCCATACG 2340 | || |||||| |||||||| || |||||||| ||||| || || |||||||| Sbjct 3010 TCGGCTTGGATTATTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATC 3069 Query 2341 TTGGTGAAGATGGAAGTCAAAAATGGCATATCGAACAGCACAGTTTTATCCCATGGCAAC 2400 |||||| || | | ||||||||| | || ||||||||||| || ||||||| Sbjct 3070 AAAATGAAGAAGGGCAGCCACGATGGCATATTGCTCAACACAGTTTTATTCCGTGGCAAC 3129 Query 2401 AAGCGGGCTCGTTAGAAGCCAAAATGGAACAAGACGGTGTTAATTACCGTGATCTAGAAC 2460 |||| || ||| | || || ||| | ||||| ||| || ||| | ||| | | Sbjct 3130 AAGCCGGATCGCTTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTATCATGAGTT--TCC 3187 Query 2461 AGAAAGGCTACTGTACCATCACAAGCCACCCACAAGGGCTTATCAATCCAGAGGAAGTTT 2520 || | ||||| ||||| || | |||| |||| |||||||| |||||| Sbjct 3188 TGA----GTTTTGTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAACAAGTTT 3243 Query 2521 ACCGCTGGTTTATTGATTATGTTGAAGACAATCAGCTTGATGTCGTTTTCTTCGGCTATG 2580 | ||| || | || ||||||||||| | | | | ||| ||||||| || |||| Sbjct 3244 ATAAATGGCTTTTAGACTATGTTGAAGAACACAATTTAAAGGTCATTTTCTTTGGATATG 3303 Query 2581 AC-------GCCATGATGACTGATAAAATAATA--AAAAGTCTTGAAT-CTAATACAAAT 2630 || || | || | | | |||| || |||| ||| ||| | |||||| | Sbjct 3304 ACCGTTTTGGCAGTTATCAGGTAAAGAATATTACTGAAAG-CTTAAATGCCAATACAGGT 3362 Query 2631 TTCCCACTAATGCCAATAAGACAACGTACAAGTGAGCTAAAAGACCCTACAAAATTCCTT 2690 | | | | | ||| |||| | ||||| ||||| | ||||| ||||| | Sbjct 3363 GGTTAATTCAAGAC-ATAGCACAAAGGACAAGCGAGCTTGCCAATCCTACTAAATTTTTG 3421 Query 2691 CA--AACGCTAT-TTATCGAAGGCAATATCACTCGCTTGGATGATGAGATTATGCGTAAA 2747 || || ||| | || | || || || || || || | ||| |||| | ||| Sbjct 3422 CAAGAAAGCTTTGCTACC---GGGAAAATTACCCGGTTCAACGATCCGATTTTAGAAAAA 3478 Query 2748 GCCTTGATAAATGCGGTAATCAAAGAAGATAACATCGGTATTCAGGTCGATAAAATGAAA 2807 || ||| | ||||| || ||||||||||| ||||| || || || || || ||| Sbjct 3479 GCATTGCTTAATGCTTCTATTAAAGAAGATAAAATCGGGATACAAGTTGACAAGGATAAA 3538 Query 2808 TCCACTTACAAAATTGACGTGGTGGATGCGATTATCGATGCGTTCTATGACGGTATGTAT 2867 | ||| |||||||| ||||| ||||| | || ||||| | ||| | || ||| | Sbjct 3539 GCTACTCTAAAAATTGATGTGGTTGATGCATTAATTGATGCAATGTATCAAGGGATGAAC 3598 Query 2868 GCGTTTGAAGATTACGCTATCACTAACAATCCAACATGGA---AAGTAGAACATATGAGC 2924 |||||| | || | || | ||| || | || || ||||||||| ||||| Sbjct 3599 CATTTTGAAAAGTATGGAATTATCAACGAT---AAATCGACTGAAGTAGAACGTATGACG 3655 Query 2925 CAAGAGGCAGTTTTAGCATGGCTAAAAAACCCAGAA 2960 ||||| ||| |||||||| | |||| || ||| Sbjct 3656 CAAGAACAGGTTCTAGCATGGTTTGAAAATCCTGAA 3691 >seq2131 Length=5454 Score = 98.7 bits (108), Expect = 2e-16 Identities = 225/328 (69%), Gaps = 22/328 (7%) Strand=Plus/Plus Query 9877 CAACAAACCATGAATGCTACTTGGTTGACCTTAACGGGTAATGCCGAAGATGGTaaaaaa 9936 ||||| || |||||||| || ||| | ||| | || || ||||| | | ||||| | Sbjct 540 CAACAGACAATGAATGCGACATGGCTAACCCTTACTGGAAATGCTGGTAAGGGTAAGTCA 599 Query 9937 aTGGTCGACATGACCAACCAAATGGCGCAAGCCGCTGCT---AACTCGACTGAAATGGTT 9993 ||||| | || | | ||||| ||| || ||| ||||| |||| ||||||| Sbjct 600 ATGGTTAAGCAGATTGATGATATGGC---AGCTGCAGCTCAAAACTCAACTGCAATGGTT 656 Query 9994 GATCGTATGAACCAAAAATTTTATGCAGTCACTCACAACATCGACTTAACTAAACAGCAA 10053 || | | | |||||||| |||||| ||| || || ||| || | | | | | || Sbjct 657 GACAATCTTAGTCAAAAATTCTATGCAATCAA-CA-AAGATC--CTAATCAGACCGGTAA 712 Query 10054 A-----CACAAGCTATCTTGACTTTGCAAGACGCTTTTGGGCAAACCGATGCAGCAG-TT 10107 || || | | |||| | ||||| || |||||| ||||||||| | ||| || Sbjct 713 TTTGGTCA-AATCGGTGCTGACCCTTCAAGATGCCTTTGGGAAAACCGATG-ATCAGGTT 770 Query 10108 GAAAACTTTAGTGTGCA--ATGGTCACAAATGATTGCGAACGGCAAGGTTTCAGGTCAAG 10165 ||||||||| || ||| |||| |||||||| || || ||||| || || | |||| Sbjct 771 GAAAACTTTGGTACGCAGTTTGGT--CAAATGATGGCCAATGGCAAAGTGTCTGCACAAG 828 Query 10166 ACATGTTGTCAATTATCAACGTCTTCCC 10193 ||||| |||| || |||||||||| || Sbjct 829 ACATGATGTCTTTTGTCAACGTCTTTCC 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111275899154404