Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq878 118 9e-22 seq1955 102 7e-17 seq7885 100 2e-16 seq3153 93.3 4e-14 seq2112 82.4 7e-11 >seq878 Length=1131996 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || || | ||| |||||||||||||| || ||||| || ||||| ||| || Sbjct 558627 ACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCATCTTCT 558568 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||||||||| |||| | | |||||||| || || || || ||||| ||| | Sbjct 558567 AGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGA 558508 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| ||| || | ||| | ||| || | | ||| ||||| | || | ||||| Sbjct 558507 ATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTA 558448 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||||| ||||| ||||||||| Sbjct 558447 CCTGTCAATGTTTTGACAAAGATCTGCATG 558418 >seq1955 Length=5322578 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || ||| |||| || | ||||||||||||||||| |||||||| Sbjct 1861029 CCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAA 1861088 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || |||||||| ||||| | || | ||| |||||||| || || Sbjct 1861089 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGA 1861148 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || || || ||| ||| || ||| || | ||| | ||||| | ||| || || Sbjct 1861149 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCT-TCAAC 1861207 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 1861208 TTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 >seq7885 Length=810 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || |||||| | ||| || ||| || | ||| Sbjct 545 TGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGT 604 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 |||||||| |||| | | ||| || |||||||| || || || |||||| |||||| Sbjct 605 TTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTG 664 Query 118656 TGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | ||| | ||| || | ||| || || || | || | ||||| || || Sbjct 665 GCTTTTACATTTTCAATGGTATCGGAAGCT-TCAACTTCCAGAGTAATAGTTTTACCCGT 723 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| |||||||| ||||| Sbjct 724 AAGAGTTTTAACAAAAATTTGCAT 747 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || || | ||| || ||||||||||| || ||||| | || || ||| ||| Sbjct 84 ACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCG 143 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| | || | | ||||||||| || || || || ||||| ||| | Sbjct 144 AGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGA 203 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| |||||| | ||| | || || | ||| || || || | || | ||||| Sbjct 204 ATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCT-TCAACTTCTAAAGTAATTGTTTT 262 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| || ||||| Sbjct 263 TCCAGTAAGAGTTTTTACAAATATTTGCAT 292 >seq3153 Length=1268 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | ||| || || || |||| |||||| |||||||| || |||||||| Sbjct 1197 TACCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATC-- 1140 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | |||| | | ||| || || ||||| ||||| |||| | || || ||||| || Sbjct 1139 TGAGAGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGG 1080 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCT 118686 || || || || || ||| ||||| || || | || | || || | ||| | Sbjct 1079 TGGAATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCT-T 1021 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || | || | ||||| || || || ||||| ||||||||||||||| Sbjct 1020 CAACTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATG 968 >seq2112 Length=2858 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || ||||||||||| || |||||| | |||| ||| ||| || | ||||||| Sbjct 361 GTCGATTCTTTTTGAATATTATAATCGG--AAAGTGTACGTCCATCTTCTAATTGTTTTC 304 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| | | ||| || || || || || || ||||||||| ||||||| || Sbjct 303 CAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGCTT 244 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | || || | ||| || || || | || | ||||| || || ||| Sbjct 243 TTACATTTTCAATTGTATCGGAAGCT-TCAACTTCAAGAGTAATAGTTTTACCCGTGAGA 185 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || ||||| ||||| Sbjct 184 GTCTTGACGAAAATTTGCAT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433788387050632