Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002185.1 Length=35466 Score E Sequences producing significant alignments: (Bits) Value seq1563 104 5e-18 >seq1563 Length=10698 Score = 104 bits (114), Expect = 5e-18 Identities = 178/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 13046 TTCAATGTTTAGTGATAACACGGCAATCGGTTTTGTTTACCCGTATTTGGGTGAAG-ACG 13104 |||||||||| || || || || || ||||||||||| || ||| ||||| | | Sbjct 3023 TTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATCAAAATGAAGAAGG 3082 Query 13105 GCAGTCAAAAATGGCATGTAGAACAGCATAGCTTTATTCCTTGGCAACAAGCAGGTTCGC 13164 |||| | | ||||||| | | || || || |||||||| ||||||||||| || |||| Sbjct 3083 GCAG-CCACGATGGCATATTGCTCAACACAGTTTTATTCCGTGGCAACAAGCCGGATCGC 3141 Query 13165 TTGAGGCTAAGATGGAACAAGATGGTGTCAATTATCGAGATTTAGAAGAAAAAGGCTACT 13224 |||||||||| | ||||||||| | ||||| || || || | | Sbjct 3142 TTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTATCATGAGTTTCCTGA------GTTTT 3195 Query 13225 GTACCATCACAAGCCATCCACAAGGACTTATCAATCCAGAGGAGGTTTATCGCTGGTTTT 13284 |||| ||||| ||| | ||||| |||| |||||||| | |||||| ||| ||| Sbjct 3196 GTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAACAAGTTTATAAATGGCTTT 3255 Query 13285 GTGATTATGTCGAAGA 13300 || ||||| ||||| Sbjct 3256 TAGACTATGTTGAAGA 3271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113358902586256