Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq290 127 4e-24 seq2791 116 7e-21 >seq290 Length=7800385 Score = 127 bits (140), Expect = 4e-24 Identities = 193/270 (71%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 135593 TTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATA 135652 ||||| | |||| || || ||| || | ||| || | | | |||||||| ||||||| Sbjct 5183089 TTTAT-CTGATACAGTGGAATGGGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATA 5183147 Query 135653 TAGAACTTAG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTA 135711 | || |||| || |||||| ||| | ||| | || || || ||| || ||||| | Sbjct 5183148 TTGAT-TTAGTGAAATGGGCCGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTT 5183206 Query 135712 GCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGAT 135771 | |||||||||| ||||||||| |||||| || | || | | ||| | | ||||||||| Sbjct 5183207 GGTAAAATAGCTAGTGGTATATGTGATAATATATTAACTTGTGTTGCACGTGCCTGGGAT 5183266 Query 135772 ACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATT 135831 || || || | | || |||||||| |||||||| |||||||||||||| || Sbjct 5183267 CCATTAAAGCCTTTGGTCTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCCGTT 5183326 Query 135832 ACAGAAAAACATATAGATACGTTAAAATAT 135861 || | || ||| | ||| |||| ||||| Sbjct 5183327 ACTGCAACACAGGT--ATATGTTATAATAT 5183354 >seq2791 Length=1173271 Score = 116 bits (128), Expect = 7e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 189395 AGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGG 189454 ||||| |||||||||| | || || | ||||| | |||||||||||| | ||||| Sbjct 938470 AGAAAATATATATATTTTTTAAATCATTTGGAAAATTCAGAAACTCATGATGATTTATGG 938411 Query 189455 AACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAT 189514 || || | |||| || ||||| | | |||||| |||||| | || ||| |||||||| Sbjct 938410 AATGCATGTCAAAATCAAATGGTAACAATAGGAAAGATGCATGGATTCTTAAGAATGTAT 938351 Query 189515 TGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTT 189561 ||||| ||||| ||| | ||||||||| ||| |||||| ||||| Sbjct 938350 TGGGCAAAGAAAATATTAGAATGGACTGAAACTCCTGAAATTGCTTT 938304 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 ||||||||||||||||||| || || | || ||| | ||| ||||||| |||| Sbjct 938142 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 938083 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 ||||||| || ||||||||||||||||| ||| ||| |||||| || |||||| || Sbjct 938082 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAATATTGCTGAAT 938023 Query 189744 TT 189745 || Sbjct 938022 TT 938021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923105103477840